PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010937003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 747aa MW: 79740.4 Da PI: 5.9131 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.4e-07 | 313 | 333 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_010937003.1 313 PCPDFRK-GACRRGDMCEYAHG 333 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 1.55E-14 | 82 | 170 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.37 | 91 | 121 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 15.035 | 91 | 166 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.0E-8 | 91 | 158 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.4E-15 | 93 | 170 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.01E-12 | 93 | 169 | No hit | No description |
SMART | SM00248 | 0.11 | 126 | 158 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.14 | 126 | 161 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 308 | 334 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-4 | 312 | 335 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-5 | 313 | 333 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 313 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 341 | 371 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 76 | 343 | 366 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 747 aa Download sequence Send to blast |
MCGGPERLKH SPSPSQSPSP FTAEQTNNSS PPVDMNHLTI ETDDNFSSLL ELAANNDADG 60 FQRSVDEDPS AVDEIGLWYG RKKGSNRMVL EPRTPLMVAA TYGSIEVLRL ILSLSSVDVN 120 RCCGPDKTTA LHCAASGGSA NAVDAVKLLL SAGADAGLVD ANGHRPADVI AVPPKLVEVK 180 LALEDLLGGP GGGSHQFLRL STSTSSFSSP PLSLSPEEDG SPSSDSSASP TAGKFHDHLP 240 PSAASEKKEY PVDPSLPDIK NSIYATDEFR MFSFKVRPCS RAYSHDWTEC PFVHPGENAR 300 RRDPRKYHYS CVPCPDFRKG ACRRGDMCEY AHGVFECWLH PAQYRTRLCK DGTSCTRRVC 360 XFAHTNDELR PLYVSTGSAV PSPRSSASAA MEMAAAMSLL PGSPSSVPVM SPTPFTPPMS 420 PSANGGGHSS LAWPQPNVPA LHLPGSNLQS SRLRTSLSAR DMPVDEYSVL PELETAQQQL 480 SDFCFSPSQA RLGSSLAGNR TVRSNTLAPS NLDDLFSAEI SSSPRYNSEQ GAVFSPTHKS 540 AVLNQFQQQQ SLLSPINTNS VFSPKAVDPQ QQLSGHPALL QASLGVSSPG RMSPRNMEPV 600 SPMSSRLAAL AQREKLQQQL RSLSSRDLSS NNGVPSMVGL PANSSWSNWA SPSGKVDWGV 660 NGAELGRYKR SASVELGSGG EEPDVSWVQS LVSPPESREE HETNTLASNG GGAASDGSNS 720 NNNQVDGSDH TVLGAWLEQM QLDQLVA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010937003.1 | 0.0 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 24-like | ||||
Swissprot | Q10EL1 | 0.0 | C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A2H3X4K2 | 0.0 | A0A2H3X4K2_PHODC; zinc finger CCCH domain-containing protein 24-like | ||||
STRING | XP_008778227.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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