PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936941.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 289aa    MW: 32606.9 Da    PI: 7.128
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936941.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed++l+d++k +G g W+  +++ g++R++k+c++rw++yl
   XP_010936941.1 14 RGSWSAQEDKILADYIKAHGEGKWRDLPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding50.83.7e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
   XP_010936941.1  67 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.328961IPR017930Myb domain
SuperFamilySSF466898.79E-2911108IPR009057Homeodomain-like
SMARTSM007175.2E-131363IPR001005SANT/Myb domain
PfamPF002493.1E-151461IPR001005SANT/Myb domain
CDDcd001672.54E-91661No hitNo description
PROSITE profilePS5129424.32762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2465116IPR009057Homeodomain-like
SMARTSM007172.9E-1566114IPR001005SANT/Myb domain
PfamPF002491.4E-1467110IPR001005SANT/Myb domain
CDDcd001672.74E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRRPCCSKV GLNRGSWSAQ EDKILADYIK AHGEGKWRDL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT KLGKEVKAIP  120
EQLNGEKDHD KLKGRKSRAG LKTEAPKELG EQAYPVIRTK AVRCTKVYIP QHQDDRMAGQ  180
NLEPCSNEQA PTSILEDVDP ANFFVDFDMQ DLLLEVQADD VSRVCMNEPP QDSNGVHGQE  240
GSNKMLSPCS DLSRHFHGAM LEEWRDGDGL QPSLASELNA LASLLDLEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936941.10.0transcription factor MYB4
TrEMBLA0A2H3YER91e-170A0A2H3YER9_PHODC; myb-related protein 308-like
STRINGXP_008797438.11e-170(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-60myb domain protein 12