PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936881.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bZIP | ||||||||
Protein Properties | Length: 445aa MW: 47887.9 Da PI: 9.2708 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 62.7 | 7.2e-20 | 355 | 417 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v + ++eN +Lk+el++++ e++kl+se+ XP_010936881.1 355 ERELKRQKRKQSNRESARRSRLRKQAECEELANRVVTQKEENNSLKEELKRMRGECDKLTSEN 417 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16596 | 3.0E-36 | 187 | 317 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.4E-17 | 349 | 414 | No hit | No description |
SMART | SM00338 | 7.8E-19 | 355 | 419 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.1E-18 | 355 | 417 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.151 | 357 | 420 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.34E-10 | 358 | 414 | No hit | No description |
CDD | cd14702 | 2.25E-21 | 360 | 411 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 362 | 377 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MGSGEVNTPT KTQKPTFTQE QPPSSPAMVY PDWASFQFLL TYRHIIMLLE QVLCLLRGFS 60 ILMWHRVHKG AHICGVHRYL LLLLFAIIFI IYNLVLGGCC NDACLSLQRT GFSSKKKGQV 120 SLIISPYRTP PFVSMYPHGG IYPHPSIPPG SYQYSPYPMP STNGIAEASV AGASGTETDG 180 KLHGGKERSP LKKSSGSLGS LNMLTGKVNK TGKASSGSAN GVFSQSGESG SEGSSEGSDA 240 NSQNGSRLKH GSEHGSGDEE AQKGRTGQTT SNEVTQTLST PIVLNPTVPF VTIPPGGLVG 300 PTTTLNIGMD YWGGSASVSA VRGKVPSAPS TAPFVPSRLA GSRDKVPPDP SIQDERELKR 360 QKRKQSNRES ARRSRLRKQA ECEELANRVV TQKEENNSLK EELKRMRGEC DKLTSENATL 420 AEKLGKHLGD ESRSDEQVDS VNGDG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 371 | 377 | RRSRLRK |
2 | 371 | 378 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019710104.1 | 0.0 | bZIP transcription factor 16 isoform X1 | ||||
Swissprot | Q501B2 | 2e-88 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | A0A2H3YGI5 | 0.0 | A0A2H3YGI5_PHODC; bZIP transcription factor 16-like isoform X2 | ||||
STRING | XP_008798444.1 | 1e-178 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11506 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 3e-68 | basic region/leucine zipper transcription factor 16 |
Publications ? help Back to Top | |||
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