PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936848.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 186aa MW: 20365.8 Da PI: 8.1518 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 75.7 | 6.7e-24 | 7 | 58 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 k Y+eC++NhAa+lG++a+DGC+E+ ++ + ++ l C+ACgCHRnFHR+ XP_010936848.1 7 KEIYRECMRNHAARLGTYACDGCCEYSSD---TLRPNVLFCTACGCHRNFHRKVA 58 678***********************998...4579****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.2E-19 | 9 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-15 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.916 | 10 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.9E-18 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.3E-10 | 77 | 140 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-21 | 78 | 142 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.8E-27 | 80 | 140 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MEPARMKEIY RECMRNHAAR LGTYACDGCC EYSSDTLRPN VLFCTACGCH RNFHRKVAPN 60 SASAAINVRV GTTVDIVRAR RRKRSKFTAE QKAQMRAFAA RLGWKVRKQE EAGGEDEVSS 120 FCKDIGITRQ VFKIWIHNHK GTAAAATSTT NTNAAPGDAE GEGDGGCEGA EGEEEVKGSA 180 SMEEEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-15 | 81 | 146 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936848.1 | 1e-136 | zinc-finger homeodomain protein 11-like | ||||
Swissprot | A2XLF4 | 4e-41 | ZHD11_ORYSI; Zinc-finger homeodomain protein 11 | ||||
Swissprot | Q10DV5 | 4e-41 | ZHD11_ORYSJ; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A3Q0IA92 | 2e-95 | A0A3Q0IA92_PHODC; zinc-finger homeodomain protein 11-like | ||||
STRING | XP_008799036.1 | 9e-81 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9204 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-31 | homeobox protein 22 |