PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936829.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 201aa MW: 22387 Da PI: 6.1535 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.6 | 1.8e-17 | 70 | 125 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rrkR +++keq++ Le+ F+ n+++s+ ++eeLA k +++ rqV vWFqNrR + XP_010936829.1 70 RRKRLRLSKEQTKLLEQSFRVNQNISRGDKEELAVKAKVKPRQVEVWFQNRRVSFR 125 89**************************************************8765 PP | |||||||
2 | HD-ZIP_I/II | 85.3 | 8.1e-28 | 71 | 161 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +k++rlskeq klLE+sF+ +++++ K+ela + +++prqv+vWFqnrR ++++q+E++ ++Lk+++ l+een rL++e eeLr+ + XP_010936829.1 71 RKRLRLSKEQTKLLEQSFRVNQNISRGDKEELAVKAKVKPRQVEVWFQNRRVSFRMRQIESERAYLKQHCGPLMEENLRLQREIEELRALI 161 5899***********************************************************************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-19 | 56 | 121 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.99E-18 | 64 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.2 | 67 | 127 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-14 | 69 | 131 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-14 | 70 | 125 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.04E-15 | 70 | 125 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 102 | 125 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.8E-8 | 127 | 170 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEESGKSPSV VEHVIPIPGA SSSAEPEKRG SNIVRDFDIN HPAPEKGEDE DIPEGGAADN 60 AEEGENENPR RKRLRLSKEQ TKLLEQSFRV NQNISRGDKE ELAVKAKVKP RQVEVWFQNR 120 RVSFRMRQIE SERAYLKQHC GPLMEENLRL QREIEELRAL IAASPTSTLT LCSSCESATA 180 LAGTQQCSTS TPSTALGHRL P |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029123757.1 | 7e-84 | homeobox-leucine zipper protein HOX3-like | ||||
Swissprot | Q0JKX1 | 3e-45 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 3e-45 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A0E0FQ53 | 8e-43 | A0A0E0FQ53_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0MZW6 | 8e-43 | A0A0E0MZW6_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G27220.1 | 1e-43 | (Oryza rufipogon) | ||||
STRING | OS01T0643600-00 | 1e-43 | (Oryza sativa) | ||||
STRING | ONIVA01G27550.1 | 1e-43 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6826 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 3e-30 | homeobox-leucine zipper protein 17 |