PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936304.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family M-type_MADS
Protein Properties Length: 244aa    MW: 26019.5 Da    PI: 8.6596
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936304.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.28.8e-231563149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krie++  rqvtfskRr g++KKA+ELS+LC+a+v ++++s+ g+ y +
  XP_010936304.1 15 KRIEDEQTRQVTFSKRRGGLFKKASELSTLCGAQVGILVYSPGGRPYSF 63
                    79*****************************************998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.011767IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-34766IPR002100Transcription factor, MADS-box
CDDcd002654.30E-36878No hitNo description
SuperFamilySSF554551.06E-27881IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-21929IPR002100Transcription factor, MADS-box
PfamPF003199.0E-261663IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-212944IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-214465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MARRTSHGRR KIEIKRIEDE QTRQVTFSKR RGGLFKKASE LSTLCGAQVG ILVYSPGGRP  60
YSFGQPGFVE VSDRFLPCVP TPIGSDPPPM PPPAYLSVSQ PSKHYLEVVN VLEAARAKGA  120
VLKERLAMVL EEEGRAYESE NDDLTVEELG DLVARLEALK MRVFSRFSTI LNQQQASSSS  180
AALTVTPLNV INPYATNGPQ AYPGGGFVLG NNGHGAGGFL GTGGHGTPSG FMGNDGNGPL  240
GFIA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936304.11e-179agamous-like MADS-box protein AGL29
TrEMBLA0A2H3XXZ81e-99A0A2H3XXZ8_PHODC; agamous-like MADS-box protein AGL29
STRINGXP_008790448.11e-100(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3755123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.11e-28AGAMOUS-like 91