PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936303.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23126.6 Da    PI: 11.0216
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936303.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.43.8e-181563149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie k  r vtfskRr g++ KA+EL +LC++++ v+ fs+ g+ y++
  XP_010936303.1 15 KKIEKKAARDVTFSKRRVGVFGKASELATLCGVDIGVVAFSPAGRPYTF 63
                    68*********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-26766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.044767IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-23882IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-16929IPR002100Transcription factor, MADS-box
PfamPF003195.2E-221663IPR002100Transcription factor, MADS-box
CDDcd001201.57E-192366No hitNo description
PRINTSPR004045.3E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAERTFRGRQ KIEIKKIEKK AARDVTFSKR RVGVFGKASE LATLCGVDIG VVAFSPAGRP  60
YTFGHPDANV VFNRFLGLVQ PEGSSGSVGA MARHRAEMLR QLTLHCSQMM DRLAAEREKR  120
AVLEERLRKV SEDPQERAWP EDLEGLGLER LARMVRGFEE QRAKARARLH QIRELGESSS  180
GPSATVGAFS MNVAAFGLPR VRDHRIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936303.11e-149agamous-like MADS-box protein AGL29
TrEMBLA0A2H3XY027e-86A0A2H3XY02_PHODC; agamous-like MADS-box protein AGL29
STRINGXP_008790449.11e-86(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5087022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-25AGAMOUS-like 61