PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936276.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 629aa    MW: 67366.8 Da    PI: 4.7318
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936276.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.12.6e-1092526292374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel..ykalppsetsekn..sseelaalklfsevsPilk 92 
                      e+Ll+cA+ +++++  la + L +++e as  gdp++R+a+yf+eAL +rl+    +    +  pp ++s+++   ++ +  +k++++++P+ k
  XP_010936276.1 252 LEALLDCAR-IADSEPDLAAKSLVKIRESASDFGDPTERVAFYFAEALCSRLSAAAGGAhqKDHSPPPPSSSYDssPEDFTLCYKALNDACPYSK 345
                     689*****9.78889999**********************************9944333003333444444444557788899999********* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                     f+hltaNqaIlea+e+++r+HiiDf+i qG+QW+aLlqaLa+Rp+g+p ++R+ g+ + + g   + +l +tg+rL++fA+ l+++fef++ v +
  XP_010936276.1 346 FAHLTANQAILEATESASRIHIIDFGIVQGVQWAALLQALATRPAGKPaKIRVSGIPALALGdsPAASLAATGNRLRHFASLLDLDFEFEA-VLT 439
                     ********************************************66555*********998888999************************.799 PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      + +l+ +++rv+pgE++aVn++lql++ll es++     ++vL+l ksl P vv++ e ea++n++ F++rf  al yy+a+fdsle  + res
  XP_010936276.1 440 PIPELTESTFRVEPGESVAVNFMLQLYTLLGESTEP---VERVLRLAKSLGPAVVTLGEYEASLNRSGFADRFGTALAYYAAVFDSLEPAMNRES 531
                     ******************************655555...559***************************************************** PP

            GRAS 280 eerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgWkdrpLvsvS 371
                      er+ vEr llgr+i+ +v   ega+rr r+e +e+W ++++++G+ pv+ls++a++qa+lll +++ s  y++ ++  g l l W drpL++vS
  XP_010936276.1 532 VERVRVERLLLGRRIRAAVGlGEGAKRRDRMEGKEEWTAMMGRCGLVPVALSNYAVSQAELLLWNYNySSKYTLLHSpPGILSLAWADRPLLTVS 626
                     *******************7369999*****************************************9999**9877255556************ PP

            GRAS 372 aWr 374
                     +Wr
  XP_010936276.1 627 SWR 629
                     **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.572225607IPR005202Transcription factor GRAS
PfamPF035149.0E-107252629IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QKQQQQQQRQ QQQQNVAASV NPPPWGPHHH PPIPEHFPFV  60
LPDSATFPDP FASDSGPGSV LGFNPPVHLD HGPFRLSDFG SSASAAAAMA GDFDSDEWMD  120
SLIGESPAES SDLMSDAWQG GGAAVAAPEL PSLFADTFAA CSAAISVPSP ASTSDLNRVV  180
FSDPVNISPL PPAHHHAIAV PKPNPPVPPQ QQVQVQALSF DPPPPDQPKS DAVFRDPAAA  240
ESDPPSPSPS LLEALLDCAR IADSEPDLAA KSLVKIRESA SDFGDPTERV AFYFAEALCS  300
RLSAAAGGAH QKDHSPPPPS SSYDSSPEDF TLCYKALNDA CPYSKFAHLT ANQAILEATE  360
SASRIHIIDF GIVQGVQWAA LLQALATRPA GKPAKIRVSG IPALALGDSP AASLAATGNR  420
LRHFASLLDL DFEFEAVLTP IPELTESTFR VEPGESVAVN FMLQLYTLLG ESTEPVERVL  480
RLAKSLGPAV VTLGEYEASL NRSGFADRFG TALAYYAAVF DSLEPAMNRE SVERVRVERL  540
LLGRRIRAAV GLGEGAKRRD RMEGKEEWTA MMGRCGLVPV ALSNYAVSQA ELLLWNYNYS  600
SKYTLLHSPP GILSLAWADR PLLTVSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1622516294375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936276.10.0scarecrow-like protein 4
SwissprotA0A024B7I01e-180SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2H3XXR20.0A0A2H3XXR2_PHODC; LOW QUALITY PROTEIN: SCARECROW-LIKE protein 7
STRINGXP_008790358.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-143GRAS family protein