PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936202.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 276aa    MW: 30693.6 Da    PI: 8.4043
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936202.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-18127181256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Le+ F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  XP_010936202.1 127 RKKLRLTKEQSALLEDRFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 181
                     788899***********************************************98 PP
2HD-ZIP_I/II124.54.7e-40127216191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLE+ F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eL+ +l
  XP_010936202.1 127 RKKLRLTKEQSALLEDRFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELK-AL 216
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-18109184IPR009057Homeodomain-like
PROSITE profilePS5007117.378123183IPR001356Homeobox domain
SuperFamilySSF466892.97E-18125191IPR009057Homeodomain-like
SMARTSM003896.7E-16125187IPR001356Homeobox domain
PfamPF000464.8E-16127181IPR001356Homeobox domain
CDDcd000862.46E-15127184No hitNo description
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
PfamPF021833.7E-11183217IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.0E-25183226IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDQEDMCHPG LALGLGIGGR SGSSNDHNRR REPCSSFSIP TPREPSLTLS ISDDAYGASN  60
MPKAEAHKAS EEERPPARIS SPHSVVSPFS AAYPPHIKRE RDAGCEEAEM ERLSSRASDE  120
EEDGSARKKL RLTKEQSALL EDRFKEHSTL NPKQKQALAK QLNLRPRQVE VWFQNRRART  180
KLKQTEVDCE FLKRCCETLT DENRRLQKEL QELKALKFAQ PLYMQFPAAT LTMCPSCESI  240
SGGASDGSKG GGGAGPFMVA KPKPRFFNPF THSATF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175183RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936202.10.0homeobox-leucine zipper protein HOX19
SwissprotA2XE767e-80HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotP466044e-80HAT22_ARATH; Homeobox-leucine zipper protein HAT22
SwissprotQ8GRL47e-80HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A2H3XXM31e-144A0A2H3XXM3_PHODC; homeobox-leucine zipper protein HAT9-like
STRINGXP_008790281.11e-145(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.19e-68HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]