PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010935456.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 246aa MW: 27542.7 Da PI: 6.3104 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.4 | 3.2e-40 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C++dC+lapyfp eqpk+f+n+h+lFG+sn++k+l++l++ ++ +am+s++yeA++r r Pv+G++g+i++l+ q+++++ el+ XP_010935456.1 10 ACAACKYQRRRCSADCPLAPYFPPEQPKQFQNAHRLFGVSNIIKILNKLEPPHKAEAMRSIIYEANVRDRYPVHGCLGLIFTLHLQIQHTQLELD 104 7*********************************************************************************************9 PP DUF260 96 llkee 100 +++++ XP_010935456.1 105 AINAQ 109 98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.463 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-39 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MTVKGGTSQA CAACKYQRRR CSADCPLAPY FPPEQPKQFQ NAHRLFGVSN IIKILNKLEP 60 PHKAEAMRSI IYEANVRDRY PVHGCLGLIF TLHLQIQHTQ LELDAINAQL SLYRHHHQSS 120 ELHFASLSSS SSSPLTVNTS NYLPFDALPN NTDNKHVEEF WAHNSYNSGS ASNSVIAVTG 180 SGFQTPLGVE HEYDEISPYF DTIEEGRVYE SSSELSLKET VQQEHVSENE LKRAAACFTL 240 TTVDMN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-32 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-32 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010935456.1 | 0.0 | LOB domain-containing protein 22-like | ||||
TrEMBL | A0A2H3Z9V1 | 1e-120 | A0A2H3Z9V1_PHODC; LOB domain-containing protein 22-like | ||||
STRING | XP_008810587.1 | 1e-121 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5228 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 8e-53 | LOB domain-containing protein 27 |