PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935420.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 333aa    MW: 36577.9 Da    PI: 9.721
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935420.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.53.6e-1847128273
        trihelix   2 WtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                     Wt +e+l Li+a+r ++er   g           +++++W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e + t+
  XP_010935420.1  47 WTLHETLILITAKRLDDERRAGGGssssggaaprSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYEARATA 128
                     **************77777765422445566666******************************************999754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9839113IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.7E-541115IPR009057Homeodomain-like
PfamPF138379.9E-1246127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSEPSNSAPL GLLDHPHHHP HHHPPPPPSS PSSSSPGLAR DYRKGNWTLH ETLILITAKR  60
LDDERRAGGG SSSSGGAAPR SAEQRWKWVE NYCWKNGCLR SQNQCNDKWD NLLRDYKKVR  120
DYEARATAST AAAAGGGPSY WAMERHERKE RNLPTNLAAE VFEALTDVLS RRAARRGGAG  180
AAATPASRGL PPPPPPPPTL TPPPQPQTLA ATPPPPPPPP PSAQPSVSAE MTETTDSSEN  240
EGVEPEAKRR RLRRLGSSVV RSATMLARTL LACEEKREQR HREMVELEER RLRMEEERTE  300
MRRQGFAGLI SAVNNLSGAI HALVSDHRNG DAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247251KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935420.10.0trihelix transcription factor ASR3
TrEMBLA0A3Q0IAF81e-146A0A3Q0IAF8_PHODC; trihelix transcription factor GTL1-like
STRINGXP_008805927.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.18e-39Trihelix family protein