PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010935371.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 581aa MW: 61931.3 Da PI: 8.9245

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010935371.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_010935371.1 74 FICEVCNKGFQREQNLQLHRRGH 96 89*******************88 PP
2	zf-C2H2	12.5	0.00044	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_010935371.1 150 WKCDKCSKRYAVQSDWKAHSKTC 172 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.05E-7	73	96	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.5E-6	73	96	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.99	74	96	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	74	96	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	2.8E-5	74	96	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.9E-4	138	171	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.05E-7	145	170	No hit	No description
SMART	SM00355	140	150	170	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MAAASSSAPF FGIREEEHHN QQQQQASSTP GSSAPAASQP PAPQKKKRNL PGNPNPDAEV 60 IALSPKTLLA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLRQKNPKEQ RRRVYLCPEP 120 TCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYRCD 180 CGTLFSRRDS FITHRAFCDA LAQESARIPT GLSTIGSHLY GNSSMGLGLS QVNPQLSSLP 240 NQTHPSADLL RLGGSGGGTQ FDHLNPSSFR QPQPRHSSPF FLGGGSSQGF NDDPQSNHPL 300 LQGKTFHGLM QLPDLQANTN NASSSSTAAA TAANLFNLSF FSNGGSTSNM NNSNNTGNQN 360 TNLLIPDHFN NGNASTEPTT LFSGNLMNDH MGSGISSLYN PSMYNESSVP QMSATALLQK 420 AAQMGATTSG GGGGSLLRGF GSSFSSGSKT TGFQAAFSGG GGDGENSRSQ VENENHFQDL 480 MNSLANGSAG IFSGGHEQQT GFGGFNPGLC NMDEGKLHRN LSTGGIGGSD GLTRDFLGVN 540 SMVRSMGGGI STREQHLGID IGSLDSEMKS GSSSRSFGGN L

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MAAASSSAPF FGIREEEHHN QQQQQASSTP GSSAPAASQP PAPQKKKRNL PGNPNPDAEV  60
IALSPKTLLA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLRQKNPKEQ RRRVYLCPEP  120
TCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYRCD  180
CGTLFSRRDS FITHRAFCDA LAQESARIPT GLSTIGSHLY GNSSMGLGLS QVNPQLSSLP  240
NQTHPSADLL RLGGSGGGTQ FDHLNPSSFR QPQPRHSSPF FLGGGSSQGF NDDPQSNHPL  300
LQGKTFHGLM QLPDLQANTN NASSSSTAAA TAANLFNLSF FSNGGSTSNM NNSNNTGNQN  360
TNLLIPDHFN NGNASTEPTT LFSGNLMNDH MGSGISSLYN PSMYNESSVP QMSATALLQK  420
AAQMGATTSG GGGGSLLRGF GSSFSSGSKT TGFQAAFSGG GGDGENSRSQ VENENHFQDL  480
MNSLANGSAG IFSGGHEQQT GFGGFNPGLC NMDEGKLHRN LSTGGIGGSD GLTRDFLGVN  540
SMVRSMGGGI STREQHLGID IGSLDSEMKS GSSSRSFGGN L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-34	146	210	3	67	Zinc finger protein JACKDAW
5b3h_F	4e-34	146	210	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010935369.1	0.0	protein indeterminate-domain 5, chloroplastic isoform X1
Refseq	XP_010935371.1	0.0	protein indeterminate-domain 5, chloroplastic isoform X1
Refseq	XP_010935372.1	0.0	protein indeterminate-domain 5, chloroplastic isoform X1
Refseq	XP_029123473.1	0.0	protein indeterminate-domain 5, chloroplastic isoform X1
Refseq	XP_029123474.1	0.0	protein indeterminate-domain 5, chloroplastic isoform X1
Swissprot	Q9ZUL3	1e-134	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A2H3YVB1	0.0	A0A2H3YVB1_PHODC; protein indeterminate-domain 5, chloroplastic-like
STRING	XP_008804317.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-112	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]