PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010935018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 350aa MW: 38210.3 Da PI: 6.971 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.8 | 3.8e-08 | 95 | 120 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ XP_010935018.1 95 FKTKLCCKFRA-GTCPYITNCNFAHGM 120 69*********.*************95 PP | |||||||
2 | zf-CCCH | 43.4 | 5.5e-14 | 226 | 251 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_010935018.1 226 WKTRICNKWEMTGYCPFGSKCHFAHG 251 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-14 | 92 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-8 | 92 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0016 | 94 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.737 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-5 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-6 | 163 | 192 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-8 | 164 | 192 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.34 | 164 | 191 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.441 | 164 | 192 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-17 | 221 | 255 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-10 | 222 | 256 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-9 | 225 | 252 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 225 | 253 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-11 | 226 | 251 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MDYSSNAIEI IPEATGPEPW AQASNDQAIW ATEDDYRSWS GEPSADSASN PAYGDRQSQS 60 QSRAGSEQPP SKKPRNPSEG NGSMSKSRAI GKMFFKTKLC CKFRAGTCPY ITNCNFAHGM 120 EELRKPPPNW QEIVAAQEEG AEPREEHQIP ILTSSSLGGD GQRSYKGRHC KKFYTEEGCP 180 YGEMCTFLHD EQSKARESVA ISLSPTVGGG AYGGGSNGSN QKPSNWKTRI CNKWEMTGYC 240 PFGSKCHFAH GAAELHKYGG GLVETEGRDA SSAAPDMKQA GVSTKAPADT VVAPMTSVPH 300 VDVYHMGVPS QRSTIINQRQ GLSQGQRTLQ KWKGPDKISR IYGDWIEENE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010935018.1 | 0.0 | zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q84UQ3 | 1e-152 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A2H3XTX9 | 0.0 | A0A2H3XTX9_PHODC; zinc finger CCCH domain-containing protein 56-like isoform X2 | ||||
STRING | XP_008788660.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-119 | C3H family protein |