PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010934919.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26910.3 Da PI: 9.062 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97 | 7.8e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELS+LCdaeva+iifs +gklye+ XP_010934919.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSILCDAEVALIIFSGRGKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 79.1 | 1.1e-26 | 77 | 156 | 5 | 84 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 ++ +e+ ++++++e++kLk+++e+Lqr qRhllGedL++Ls+keLqqLe+qLe++l++ R++++++l + ++l++k XP_010934919.1 77 QDDTIDEHGTQNWYHEFSKLKAKYESLQRRQRHLLGEDLGTLSVKELQQLERQLESALSRTRQRRERHLEDINRQLKNKL 156 444478999**************************************************************999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.137 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.42E-34 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.40E-46 | 2 | 78 | No hit | No description |
PRINTS | PR00404 | 1.4E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.0E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.8E-22 | 83 | 155 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.221 | 86 | 191 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FSKRRNGLLK KAYELSILCD AEVALIIFSG RGKLYEFGSV 60 GISKTIERYQ SCHYASQDDT IDEHGTQNWY HEFSKLKAKY ESLQRRQRHL LGEDLGTLSV 120 KELQQLERQL ESALSRTRQR RERHLEDINR QLKNKLEVGG YSFRAIQGSL ESNAMIAGNP 180 FPLHHSQSNT MVCEPALQTG YHHFFPPETA ISSNSAAENN FMQGWLFELN GHDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 4e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 4e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 4e-21 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 4e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 4e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 4e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 4e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 140 | RQLESALSRTRQRR |
2 | 137 | 142 | RQRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010934919.1 | 1e-176 | MADS-box transcription factor 6 isoform X3 | ||||
Swissprot | Q8LLR1 | 1e-104 | MADS3_VITVI; Agamous-like MADS-box protein MADS3 | ||||
TrEMBL | A0MTC2 | 1e-118 | A0MTC2_CROSA; MADS-box transcription factor AGL6a | ||||
STRING | XP_008797646.1 | 1e-115 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-90 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
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