PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934558.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WOX
Protein Properties Length: 274aa    MW: 30273.3 Da    PI: 6.0738
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934558.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-183798257
                    T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    ++R+ +t++q+++L +l+++   r p+ae+++++++ l    +++ ++V++WFqN++a+e++
  XP_010934558.1 37 STRWIPTADQIRILRDLYYNmgIRSPTAEQIQKISATLrkygKIEGKNVFYWFQNHKARERQ 98
                    58*****************8779*************************************97 PP
2Wus_type_Homeobox109.22.4e-3536100265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRW Pt++Qi+iL++ly+  G+r+P++e+iq+i+a+L++yGkie+kNVfyWFQN+kaRerqk+
     XP_010934558.1  36 SSTRWIPTADQIRILRDLYYnMGIRSPTAEQIQKISATLRKYGKIEGKNVFYWFQNHKARERQKK 100
                        789***************9869*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.89E-1131103IPR009057Homeodomain-like
PROSITE profilePS5007110.0743399IPR001356Homeobox domain
SMARTSM003897.4E-435103IPR001356Homeobox domain
CDDcd000861.14E-538100No hitNo description
PfamPF000466.0E-163898IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-63998IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEHHQYQQQQ HEESNTSSVV GGSVGGSKSN FLCRQSSTRW IPTADQIRIL RDLYYNMGIR  60
SPTAEQIQKI SATLRKYGKI EGKNVFYWFQ NHKARERQKK RLTVDISSTT STPSNSAITT  120
MSPGAECCLS GGGGDGSGME GSMGWVELES AATPWMYRYP LEHEPGAVMV GREIETLPLF  180
PIKQEEEQEG EEVEKKGEFI TGSHLNNCNN TTNNNNDGSN NQCLPAFYWG GGQEDQVHHL  240
YNHHHNDGSG GAAHPAASLD LTLNSCYYAP PGST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802536.11e-107WUSCHEL-related homeobox 1B-like
TrEMBLA0A2H3YRS01e-106A0A2H3YRS0_PHODC; WUSCHEL-related homeobox 1B-like
STRINGXP_008802536.11e-106(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-37WOX family protein