PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010934041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 684aa MW: 74898 Da PI: 4.4033 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.7 | 7.8e-52 | 9 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptdeelv++yLk k++g+ +++ vi++vd++k+ePwdLp k +++++ ew+fFs+rd+ky+tg+r+nrat++gyWkatg+d+ ++ XP_010934041.1 9 LPLGFRFRPTDEELVNHYLKGKINGRINSEVVVIPDVDVCKCEPWDLPdKsVIRSDDPEWFFFSPRDRKYPTGHRANRATEAGYWKATGRDRMIK 103 699***********************9888788**************96446677888************************************* PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k + l+g+kktLvfy+grap+g++t+W+mheyr XP_010934041.1 104 TKppGAILIGMKKTLVFYRGRAPHGVRTNWIMHEYRT 140 *9988899***************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-59 | 6 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.738 | 9 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-27 | 10 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0071470 | Biological Process | cellular response to osmotic stress | ||||
GO:1900426 | Biological Process | positive regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 684 aa Download sequence Send to blast |
MAVLLPESLP LGFRFRPTDE ELVNHYLKGK INGRINSEVV VIPDVDVCKC EPWDLPDKSV 60 IRSDDPEWFF FSPRDRKYPT GHRANRATEA GYWKATGRDR MIKTKPPGAI LIGMKKTLVF 120 YRGRAPHGVR TNWIMHEYRT SESEFDSGEQ GSFVLCRLFK KPEDKSASSN VDGVERNVGK 180 MESSCLSPTP VRPAPGETQH GTGTLQEFHL IQELPEPDMQ ENLQTLVNTS DTQSTGIESW 240 LAKGGDCAMT YALGPEESHF NGNGAPVISN HAADISAEVA SQFLGPEYEQ LDLDDFPHVS 300 SQMPLSKEYS ICDIVDQGLH EDMFQICSLE VSVSDFLDEL LSNQDGDSIE VSDTHRGSVP 360 RVASDGYICM IEKVSPSDSA SGNESGSGSD ADTVAAIIQD GLEFDAGACF SESASLPSGS 420 SDIDNDNAYP VTTVNQVNLL LEEAKAGLHL RNQSLRQHVS SMGSAANFWD QESTRKLEFI 480 KDGLSNSLFN DTERPTCQAS TSGTGIEIRT RQHLPALDKL MAEQGLAFRR LLLQRIIHTG 540 SMSSTESELS SKTDDNETDS ELSSKKDENE VESVITEAGE CAEHQIPEDT EVAGSIFLDD 600 VDGTCDHDDT ASTEARIVSS EISCESKSVL RQRTRGTHEN PDKLEGLSLH SETPGTGSVS 660 VTRMIVVLLA VLLICVVISR YLSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-45 | 8 | 161 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-45 | 8 | 161 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-45 | 8 | 161 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-45 | 8 | 161 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-45 | 8 | 161 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-45 | 8 | 161 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-45 | 8 | 161 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-45 | 8 | 161 | 19 | 168 | NAC domain-containing protein 19 |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00108 | PBM | Transfer from AT4G35580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010934041.1 | 0.0 | protein NTM1-like 9 isoform X2 | ||||
TrEMBL | A0A2H3XGT2 | 0.0 | A0A2H3XGT2_PHODC; protein NTM1-like 9 | ||||
STRING | XP_008783552.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35580.1 | 2e-78 | NAC transcription factor-like 9 |