PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934040.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 685aa    MW: 75026.2 Da    PI: 4.4033
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934040.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.77.8e-5291401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Ptdeelv++yLk k++g+ +++  vi++vd++k+ePwdLp k  +++++ ew+fFs+rd+ky+tg+r+nrat++gyWkatg+d+ ++
  XP_010934040.1   9 LPLGFRFRPTDEELVNHYLKGKINGRINSEVVVIPDVDVCKCEPWDLPdKsVIRSDDPEWFFFSPRDRKYPTGHRANRATEAGYWKATGRDRMIK 103
                     699***********************9888788**************96446677888************************************* PP

             NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +k  +  l+g+kktLvfy+grap+g++t+W+mheyr 
  XP_010934040.1 104 TKppGAILIGMKKTLVFYRGRAPHGVRTNWIMHEYRT 140
                     *9988899***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-596161IPR003441NAC domain
PROSITE profilePS5100558.7389161IPR003441NAC domain
PfamPF023652.5E-2710139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MAVLLPESLP LGFRFRPTDE ELVNHYLKGK INGRINSEVV VIPDVDVCKC EPWDLPDKSV  60
IRSDDPEWFF FSPRDRKYPT GHRANRATEA GYWKATGRDR MIKTKPPGAI LIGMKKTLVF  120
YRGRAPHGVR TNWIMHEYRT SESEFDSGEQ GSFVLCRLFK KPEDKSASSN VDGVERNVGK  180
MESSCLSPTP VRPAPGETQH GTGTLQEFHL IQELPEPDMQ ENLQTLVNTS DTQSTGIESW  240
LAKGGDCAMT YALGPEESHF NGNGAPVISN HAADISAEVA SQFLGPEYEQ LDLDDFPHVS  300
SQMPLSKEYS ICDIVDQGLH EDMFQICSLE VSVSDFLDEL LSNQDGDSIE VSDTHRGSVP  360
RVASDGYICM IEKVSPSDSA SGNESGSGSD ADTVAAIIQD GLEFDAGACF SESASLPSGS  420
SDIDNDNAYP VTTVNQVNLL LEEAKAGLHL RNQSLRQHVS SMGSAANFWD QESTRKLEFI  480
KDGLSNSLFN DTERPTCQAS TSGTGIEIRT RQHLPALDKL MAEQGLAFRR LLLQRIIHTG  540
SMSSTESELS SKTDDNETDS ELSSKKDENE VESVITEQAG ECAEHQIPED TEVAGSIFLD  600
DVDGTCDHDD TASTEARIVS SEISCESKSV LRQRTRGTHE NPDKLEGLSL HSETPGTGSV  660
SVTRMIVVLL AVLLICVVIS RYLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-45816119168NAC domain-containing protein 19
3swm_B5e-45816119168NAC domain-containing protein 19
3swm_C5e-45816119168NAC domain-containing protein 19
3swm_D5e-45816119168NAC domain-containing protein 19
3swp_A5e-45816119168NAC domain-containing protein 19
3swp_B5e-45816119168NAC domain-containing protein 19
3swp_C5e-45816119168NAC domain-containing protein 19
3swp_D5e-45816119168NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934040.10.0protein NTM1-like 9 isoform X1
TrEMBLA0A2H3XGT20.0A0A2H3XGT2_PHODC; protein NTM1-like 9
STRINGXP_008783552.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.22e-78NAC transcription factor-like 9