PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933903.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 429aa    MW: 46241.5 Da    PI: 7.6191
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933903.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.6e-08107127526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f + G C yG++C+F H+
  XP_010933903.1 107 ICNYFIA-GNCTYGENCRFLHS 127
                     7997777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.1782854IPR000571Zinc finger, CCCH-type
SMARTSM003560.123053IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.004102129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-7104127IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-6104128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-6106127IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-5108127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.9E-45129420IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.83E-45133181IPR017986WD40-repeat-containing domain
SMARTSM003201.5E-5133172IPR001680WD40 repeat
PfamPF004001.3E-4136172IPR001680WD40 repeat
PROSITE profilePS5029419.96140389IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.85140181IPR001680WD40 repeat
PRINTSPR003204.0E-7159173IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780159173IPR019775WD40 repeat, conserved site
SMARTSM0032023212249IPR001680WD40 repeat
SuperFamilySSF509781.83E-45219425IPR017986WD40-repeat-containing domain
SMARTSM003200.004256293IPR001680WD40 repeat
PfamPF004000.0046260293IPR001680WD40 repeat
PROSITE profilePS5008211.778263302IPR001680WD40 repeat
PRINTSPR003204.0E-7280294IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780280294IPR019775WD40 repeat, conserved site
SMARTSM003203.0E-4296333IPR001680WD40 repeat
PfamPF004000.003298332IPR001680WD40 repeat
PRINTSPR003204.0E-7320334IPR020472G-protein beta WD-40 repeat
SMARTSM003201.1337380IPR001680WD40 repeat
SMARTSM003206383420IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDIGTDDRYG NKRVHQRMGS SSTAAVPDRA NKVCYHWRAG RCNRHPCPFL HSEPPAAPAH  60
HQGLVWRNPN VGGGGGGSSN PGPPSKWGKG RGGGAAGRLP AKVPDKICNY FIAGNCTYGE  120
NCRFLHSWFI SDSFSLLTPL QGHQKVITGI ALPSGSDKLY SGSKDESVRV WDCQTGQCVG  180
VINLGGEIGC MISEGPWVFI GIPNAVKAWN TQTAADLSLS GPTGQVYALV VGNEMLFAGT  240
QDGRILAWKF SAVGNCFEPA ASLSGHRLAV VSLVVGSVRL YSGSMDHTIK VWDLATLQCI  300
QTLTDHTSVV MSVLCWDQFL LSCSLDKTIK VWVATESGNL EATYTHNEEH GVLALCGMHD  360
AQAKPVLLCS CNDNNVRLYD LPSFSERGKI FSKEEVRAIQ IGPGGLFFTG DGTGELKVWK  420
WLTNEMPTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-211194198323Tako8
6g6n_A2e-211194198323Tako8
6g6n_B2e-211194198323Tako8
6g6n_C2e-211194198323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933903.10.0zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A2H3Y9890.0A0A2H3Y989_PHODC; zinc finger CCCH domain-containing protein 17-like
STRINGXP_008795362.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]