PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010933895.1 | ||||||||
Common Name | CBF3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23202.9 Da PI: 4.8607 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 47 | 97 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ +Wv+e+r+p +k+ r++lg+f tae+Aa+a++ a+ +l+g XP_010933895.1 47 PVYKGVRRRN-ADKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAMALRG 97 68*****887.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.9E-13 | 47 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-31 | 48 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-26 | 48 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-21 | 48 | 107 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.931 | 48 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 49 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.71E-27 | 49 | 107 | No hit | No description |
PRINTS | PR00367 | 1.1E-7 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MESFSSDSLD SPMARRSASD EEAYSTVWSA PPKRRAGRTK FRETRHPVYK GVRRRNADKW 60 VCEVREPNKK SRIWLGTFPT AEMAARAHDV AAMALRGRSA CLNFADSAWL CPVPSSSNPK 120 DIQKAAVEAA EAFRPPTESD VTKSREDAAM AMTAGPSVPA ADDPFYMDDR LDFGMQGYLD 180 MAEGLLIDPP PMNADEEESD GSVSLWSYSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-14 | 46 | 104 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010933896.1 | 1e-153 | dehydration-responsive element-binding protein 1G isoform X1 | ||||
Refseq | XP_010933897.1 | 1e-153 | dehydration-responsive element-binding protein 1G isoform X3 | ||||
Refseq | XP_029123066.1 | 1e-153 | dehydration-responsive element-binding protein 1G isoform X2 | ||||
Swissprot | A2XWL6 | 3e-69 | DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q8H273 | 3e-69 | DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | M4PTJ3 | 1e-151 | M4PTJ3_ELAGV; Ethylene responsive transcription factor | ||||
STRING | XP_008803257.1 | 1e-129 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 8e-58 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Entrez Gene | 105054150 |
Publications ? help Back to Top | |||
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