PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933428.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 748aa    MW: 82485.3 Da    PI: 5.9679
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933428.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.34.1e-214297156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t++q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  XP_010933428.1 42 KKRYHRHTAHQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMK 97
                    688999***********************************************998 PP
2START154.49.7e-492424663206
                     HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
           START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                     a +aa++l++k   +ep+Wv+    +n +evl  +e s+              + +ea r++++v+m++ +lv  +ld + +W e ++    ka+
  XP_010933428.1 242 AMTAAEQLLRKCHTNEPLWVRNG--SNAMEVLDLEEHSRMfpwpmdlkqlhgdFGTEATRDTALVIMNSITLVDAFLDAN-KWMELFPslvsKAK 333
                     678999***************99..**********99999************99**************************.************** PP

                     EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
           START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                     t++vi +g      g l+lm+aelq+lsplvp R+ +f Ry++q +++g+w+ivd  vd   +   + s+ R +++pSg++i++++ng+s+v+w+
  XP_010933428.1 334 TVQVIAPGisthgnGSLHLMQAELQFLSPLVPaREAYFFRYCQQnSEEGTWMIVDFPVDGFHDGL-DTSFPRYRRRPSGCVIQDMPNGYSRVIWI 427
                     ***************************************************************98.9**************************** PP

                     E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ehv+++ +  h++++++v+sg+a+ga +wv+ lqrqce+
  XP_010933428.1 428 EHVEVENKPLHQVFNQFVSSGMAFGATRWVSILQRQCER 466
                     *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.46E-2025100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-2226100IPR009057Homeodomain-like
PROSITE profilePS5007116.9573999IPR001356Homeobox domain
SMARTSM003891.5E-1940103IPR001356Homeobox domain
PfamPF000461.1E-184297IPR001356Homeobox domain
CDDcd000863.60E-1942100No hitNo description
PROSITE patternPS0002707497IPR017970Homeobox, conserved site
PROSITE profilePS5084843.912231469IPR002913START domain
SuperFamilySSF559611.83E-30232468No hitNo description
CDDcd088753.55E-111235465No hitNo description
SMARTSM002349.0E-30240466IPR002913START domain
PfamPF018521.4E-40242466IPR002913START domain
Gene3DG3DSA:3.30.530.206.2E-5319450IPR023393START-like domain
SuperFamilySSF559612.01E-16484664No hitNo description
SuperFamilySSF559612.01E-16695732No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MVMGRGGRKE EEMESGSGSG HIDGVSCSEE QDNEQQQPPA KKKRYHRHTA HQIQEMEALF  60
KECPHPDDKQ RLKLSHELGL KPRQVKFWFQ NRRTQMKAQQ DRQDNVILRA ENESLKNENF  120
RLQAAIRNVV CPNCGGPAIL GEMCFDEQHL RIENARLKEE LERLSCITSR YGSRAAQPLG  180
PAPSLLPPSL DLHMGMYSGH FNEHPIVSCT DIIPEPPISD GHQPFSGIVI MDHDKPLVLD  240
LAMTAAEQLL RKCHTNEPLW VRNGSNAMEV LDLEEHSRMF PWPMDLKQLH GDFGTEATRD  300
TALVIMNSIT LVDAFLDANK WMELFPSLVS KAKTVQVIAP GISTHGNGSL HLMQAELQFL  360
SPLVPAREAY FFRYCQQNSE EGTWMIVDFP VDGFHDGLDT SFPRYRRRPS GCVIQDMPNG  420
YSRVIWIEHV EVENKPLHQV FNQFVSSGMA FGATRWVSIL QRQCERLASL MAKNISDLGV  480
IPSPEARKNM MKLSQRMIRT FCASISASEV QSWTALSDSS DDTIRVTTRK NTEPGQPNGV  540
ILSAVSTTWL PFPHQQVFEL LTDERCRCQL EALSNGNSFH EVAHIANGSH PRNCVSLLRI  600
NAASNSSQNV ELLLQESSTH PSGGSLVVYA TVDVDAVQVA MSGEDSSFIP LLPTGFIISP  660
ADPPTFSGVT DAFPSPSTDV DGTATSCGGD GSATGCLLTV AMQVLASAVP SAKLQLSSVT  720
AINNHLCSAV QQISTALGAX AEPVIASL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029123145.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
SwissprotQ336P20.0ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBLA0A2H3YTV60.0A0A2H3YTV6_PHODC; homeobox-leucine zipper protein ROC3-like
STRINGXP_008803566.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]