PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010933093.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 193aa MW: 21117.1 Da PI: 7.7371 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.9 | 4.6e-40 | 8 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkCa+dCv+apyf++e+ +++fa++hk+FGasnv+kll ++p+ +r +a+ +++yeA+ar+rdPvyG+vg+i++lqqq+++l+ +l XP_010933093.1 8 PCGACKFLRRKCAADCVFAPYFCSEEgAARFAAIHKVFGASNVTKLLLHVPPADRCEAVVTIAYEAQARLRDPVYGCVGHIFALQQQVANLQLQL 102 7***********************9989****************************************************************999 PP DUF260 95 allkee 100 ++k++ XP_010933093.1 103 LQAKAQ 108 988877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.943 | 7 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.6E-39 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MASGGGSPCG ACKFLRRKCA ADCVFAPYFC SEEGAARFAA IHKVFGASNV TKLLLHVPPA 60 DRCEAVVTIA YEAQARLRDP VYGCVGHIFA LQQQVANLQL QLLQAKAQLS QSVISSQTLE 120 NQYQGNAANP LTRPYPYTKS MSPQSSLDCI DPSSDSLLPM HEMFFRDDLF THRGPTHNEF 180 GELQALASKM MKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-38 | 4 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-38 | 4 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010933093.1 | 1e-143 | LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 2e-64 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A2H3Y6T5 | 1e-129 | A0A2H3Y6T5_PHODC; LOB domain-containing protein 16-like | ||||
STRING | XP_008794314.1 | 1e-130 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10262 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 4e-54 | lateral organ boundaries-domain 16 |