PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932932.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 755aa    MW: 88359.1 Da    PI: 7.1413
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932932.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.22.3e-1767152191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY++YA+++GF +++ +s++  ++g++   ++ C+k gk + +++     ++++++++t+C a+++++ + dg  +++++ l+HnH+l+p
  XP_010932932.1  67 RFYDRYARRTGFGIKVLNSTYY-EDGRCRYLWLSCNKDGKVKYKTDF----HSSKPTKKTNCMARIQLRHRADGLLHMKQVILDHNHPLSP 152
                     5***************999887.8899***************99877....89999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-1467152IPR004330FAR1 DNA binding domain
PfamPF105512.3E-33257350IPR018289MULE transposase domain
PfamPF044341.7E-6544577IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.569544580IPR007527Zinc finger, SWIM-type
SMARTSM005756.1E-5555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MEEQSDDDLR MVSVNESADA REGQEVATVN AQEKETDVGK ESQEMNGGDE DVPKLGMTFQ  60
TPEEAFRFYD RYARRTGFGI KVLNSTYYED GRCRYLWLSC NKDGKVKYKT DFHSSKPTKK  120
TNCMARIQLR HRADGLLHMK QVILDHNHPL SPGTAKSYHT RKRKRFLEND DGAVIPLDWS  180
YTEGGFGRVR KRGTGEKKCE LRLEKGDGEA IHRFFIGMQT RDSFFFHLMD LDEEGRLRNL  240
FWADGRSRTA YQYFGDVVLF DTTYLIDKYD VPLVSFVGVN HHGQKVLLGC GLLSDESNET  300
YIWLFKTWLS CMFGCPPIAI ITDRCNALRE AVAEVFPKAH HRQCLWHIMK RIPENLQGHV  360
DCKEIKKTLK KVTCDSLRND EFEENWRKMV EKYQLENNEW LQSLYEDRRY WASVFVKETF  420
WAGMSVTRRG ESMKSFFDEY VHYKITLRQF LRKYEMVVQS KYEKEVQADI ELFHKSPQLI  480
TQLYMEEQLG KAYTFDVFKK FQAEIRALIY CVSSLVKVDG QVYTFEVKER IRVKDSKHME  540
NKLYEVLYDE KELEVRCICC SFQFRGILCR HALSVLNFQN VVEIPSKYIL ERWRKDFKRM  600
HALACFPNEV VADGPLESHG NFYKHCLKLS EIGLMSDEKY EFALKVVNEA IQNLLANDSI  660
CDGTQTGNVS HEALSNCNVV SFNVNGDRNR GIENNGFHNP VQVRQTVNHP HFEFFQNRGH  720
NDQQSAGYRS GMDWGFQQYF QEGQIQETNP SPRPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932932.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A2H3X5690.0A0A2H3X569_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRINGXP_008778473.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-151FAR1-related sequence 6