PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010932879.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | WRKY | ||||||||
Protein Properties | Length: 353aa MW: 39352.9 Da PI: 10.735 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.4 | 4.7e-31 | 286 | 343 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d +++++tYegeHnh XP_010932879.1 286 ADEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCVDDSSMLIVTYEGEHNH 343 69************************9988**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.7E-17 | 238 | 283 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 7.9E-34 | 273 | 344 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.792 | 280 | 343 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.45E-27 | 283 | 344 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-38 | 285 | 345 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-27 | 287 | 343 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEEVELANRA AVGSCHKILN LLSRSQDQIL LCRNLVAETE VAVSRFKKVV SKLGNEAGHA 60 RVRRLNKALS PFNHKIFLDN PIASRSVPSP VPLQLLPRDS IEFPGRELGS TGRIPQQIPQ 120 RMFLENPVLD VDAASRSTFQ LGPHAPPTHL HFLQQQQNNQ KFQLQQRLKF QSEMYRRSNG 180 RINLKFDNSS CSATGSSSRS FLSSLSVDGS VASLDGRPIH LMSGPESSNP TNSNQYPRRR 240 CTGRGGDGSG RCATAGRCHC SKKRKLRVRR SIKVPAISNK IADIPADEYS WRKYGQKPIK 300 GSPHPRGYYK CSSMRGCPAR KHVERCVDDS SMLIVTYEGE HNHGRLVTPL VHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 278 | 343 | 7 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010932879.1 | 0.0 | protein WRKY1 | ||||
Swissprot | Q32SG4 | 1e-111 | WRKY1_MAIZE; Protein WRKY1 | ||||
TrEMBL | A0A2H3YRQ7 | 0.0 | A0A2H3YRQ7_PHODC; protein WRKY1 | ||||
STRING | XP_008802836.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2859 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 2e-80 | WRKY DNA-binding protein 39 |