PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931687.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 297aa    MW: 33778.2 Da    PI: 4.6342
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931687.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-1982135356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q++ Le+ F+ ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  XP_010931687.1  82 KKRRLTADQVQFLEKNFAFDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 135
                     56689************************************************9 PP
2HD-ZIP_I/II1291.9e-4181171191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekkrrl+++qv++LE++F  ++kLeperK +la++Lglqprqva+WFqnrRAR+ktkq+Ekdye+Lk++yd lk++ e+L +e+e+L++e+
  XP_010931687.1  81 EKKRRLTADQVQFLEKNFAFDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQMEKDYEVLKSSYDVLKADCENLLRENEKLKAEV 171
                     69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-1972139IPR009057Homeodomain-like
PROSITE profilePS5007117.50877137IPR001356Homeobox domain
SMARTSM003892.7E-1980141IPR001356Homeobox domain
PfamPF000461.2E-1682135IPR001356Homeobox domain
CDDcd000862.22E-1882138No hitNo description
Gene3DG3DSA:1.10.10.602.3E-1983144IPR009057Homeodomain-like
PRINTSPR000311.2E-5108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5117133IPR000047Helix-turn-helix motif
PfamPF021831.3E-15137178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MARMRCGGSN MAVLLQNEGV PCDAIETMLV SGSSHAGFLG LKSMMNIDNV HGITTERSFY  60
RPLELEETGE ENLEGFFHQT EKKRRLTADQ VQFLEKNFAF DNKLEPERKI QLAKDLGLQP  120
RQVAIWFQNR RARWKTKQME KDYEVLKSSY DVLKADCENL LRENEKLKAE VLFLTEELLK  180
REKGDSQTYD VQVPPPLLQK LDLVSFSEEK KPDVDVLLCK PEDLSSANST VSDSDSPHCT  240
DGLLSPPLEP ADASNVFDQV GLSHLDKYEG IKGCSFLKPE DNSCNYVFPV EDQAFWF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931687.10.0homeobox-leucine zipper protein HAT5
TrEMBLA0A2H3WYE41e-171A0A2H3WYE4_PHODC; homeobox-leucine zipper protein HAT5-like
STRINGXP_008775589.11e-172(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16055714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-41homeobox 1