PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931546.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YC

Protein Properties

Length: 290aa MW: 31712.9 Da PI: 5.2983

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931546.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.6	6.6e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t+ ++++v + ++fdfl div + XP_010931546.1 6 ETRFPASRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITLRRGMKTMSALHLKQCVHSFNVFDFLKDIVSK 86 5789**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.24E-20	3	89	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.8E-25	3	72	IPR009072	Histone-fold
Pfam	PF00808	1.1E-17	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MRKKLETRFP ASRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITLRRGMK 60 TMSALHLKQC VHSFNVFDFL KDIVSKVPDM GTSDAGGDDR SAKRRKAADD DNDNEELKRS 120 KAHEGAAAHG GGGRGRGRGR GRGRGARGAR GADKDGAHYD KYEDDPGSSP QHSDRPPHMK 180 SEIVDDGISA RESKETTVSC SNAGAAIRNF DLNLDLDENG DTPTAAATAT DSIKATATAA 240 SSETNHEMKH DEYPGWSLSD MDKMAIDPIQ FALSNRRLDE EEEDYDNEDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	7e-22	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	143	RGRGRGRGRGR
2	135	144	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931546.1	0.0	dr1-associated corepressor isoform X1
TrEMBL	A0A2H3XPI2	1e-149	A0A2H3XPI2_PHODC; dr1-associated corepressor-like isoform X1
STRING	XP_008786874.1	1e-150	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-51	nuclear factor Y, subunit C11