PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931466.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 318aa    MW: 35628.6 Da    PI: 6.3449
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931466.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.1e-101443130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +g+WT+eEd +lv +++++G+g+W+++++ 
   XP_010931466.1 14 KGPWTAEEDIILVTYIQEHGPGNWRSVPAN 43
                     79************************9976 PP
2Myb_DNA-binding44.82.8e-144893148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T+ E+  ++++ + lG++ W++Ia++++  Rt++++k++w+++l
   XP_010931466.1 48 RGNFTPHEEGMIIHLQAVLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 93
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-11543IPR009057Homeodomain-like
SuperFamilySSF466892.86E-211189IPR009057Homeodomain-like
SMARTSM007175.21345IPR001005SANT/Myb domain
PfamPF002494.6E-81443IPR001005SANT/Myb domain
CDDcd001678.91E-101693No hitNo description
PROSITE profilePS5129421.414397IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-214498IPR009057Homeodomain-like
SMARTSM007173.6E-134795IPR001005SANT/Myb domain
PfamPF002491.7E-124893IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRPPCCDKV GIKKGPWTAE EDIILVTYIQ EHGPGNWRSV PANTGIKRGN FTPHEEGMII  60
HLQAVLGNRW AAIASYLPQR TDNDIKNYWN THLKKKIKKN PTTMDSHKTP SNSTITCNEL  120
ISNGCNSETR NSDISTSHSP LLKSYHSTSS YAWSTGNISR LLEGWMRSSP KANLKPTQDE  180
QHQSIHAFNK SSSDAINQAY VQEELKSDRE CSNPISQAYM KWEQVKNDQE CCGPIPHKEL  240
ESLFSSENSG GNAWEKSSVD STFYRPQSAF ADAEANQRLD SQQRIPLSLL EKWLLDEAPG  300
QVDLVELSAD CCSDAMLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-16129725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931465.10.0transcription factor MYB60
SwissprotB3VTV72e-82MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A2H3Y2N11e-156A0A2H3Y2N1_PHODC; myb-related protein 306
STRINGXP_008792495.11e-157(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.17e-73myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]