PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010931300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ERF | ||||||||
Protein Properties | Length: 281aa MW: 31454.9 Da PI: 5.2174 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 68 | 118 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr p + r r +lg+f ta eAa a+++a+++++g XP_010931300.1 68 CNYRGVRQRT-WGKWVAEIRKP---N-RgSRLWLGTFNTALEAALAYDKAARAMYG 118 56*****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.61E-29 | 68 | 127 | No hit | No description |
Pfam | PF00847 | 3.1E-13 | 68 | 118 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-20 | 69 | 126 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-34 | 69 | 132 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-31 | 69 | 127 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.246 | 69 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-10 | 70 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-10 | 92 | 108 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MAEQERKQRV RNPHGGIHPV AEIPAEWGEL NRQPDGSNDG EKYIQRVPAK GSRKGCMRGK 60 GGPENSHCNY RGVRQRTWGK WVAEIRKPNR GSRLWLGTFN TALEAALAYD KAARAMYGPH 120 ARLNLPECST VAKDKTLAPA ECDEFTATTS QHSGLNPPQS TVEAATCMVK TDEELFEHFD 180 CLQDLHQDMF GIGNILRDVD ADPSDCTGTA QNRLGGVDEI TNWHCGTWCH MEQFPADMDC 240 SYDFTGPTRQ DLEFGIASDQ GMPELEFPDL SFFPESHRFY S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-16 | 69 | 126 | 5 | 63 | ATERF1 |
3gcc_A | 3e-16 | 69 | 126 | 5 | 63 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931300.1 | 0.0 | dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A2H3Y2D9 | 1e-147 | A0A2H3Y2D9_PHODC; dehydration-responsive element-binding protein 2B-like isoform X1 | ||||
STRING | XP_008792179.1 | 1e-147 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7315 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 1e-36 | ERF family protein |