PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931060.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 621aa    MW: 68409.4 Da    PI: 7.0877
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931060.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.2e-093774141954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  XP_010931060.1 377 FEHflHPYPKDSDKLMLAKQTGLTRSQVSNWFINARVR 414
                     554459******************************88 PP
2BELL124.63.9e-40244315172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqelq+kkakL+++leeV++rY+qy++q+q+v+ssFe+vag+gsa+ Yt+lAl++iS++FrcL+dai++qi
  XP_010931060.1 244 ERQELQMKKAKLVNMLEEVEQRYRQYHHQMQIVVSSFEQVAGIGSARTYTALALQTISKQFRCLRDAITGQI 315
                     79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-61171313IPR006563POX domain
PfamPF075263.7E-50177312IPR006563POX domain
PROSITE profilePS5007112.147355418IPR001356Homeobox domain
SMARTSM003892.3E-9358422IPR001356Homeobox domain
CDDcd000861.08E-11358419No hitNo description
SuperFamilySSF466895.99E-17359425IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-28361424IPR009057Homeodomain-like
PfamPF059205.5E-18375414IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MATYFHGAPA EFQADGLQTL YLMNPNYAAY SDTAVPANMI LLNSVNSLNP TNLGHCAATA  60
QPNQHQHFAG IPLQPPVAAH ESNRLPSIQP SHDVSADPRL HYNLWTPTAP NNSIDMASQL  120
GPRRTSTAPP QPQQGLSLSL SPQEITLAGT EEAKILGSSS SAPSGVSNAV SVLQSFLIGS  180
KYLKAAQQLL DEAVHVGQGI KGDSMKGTNS KSPTKSNRES EGTGTGTAEE DKSTKREADL  240
TTAERQELQM KKAKLVNMLE EVEQRYRQYH HQMQIVVSSF EQVAGIGSAR TYTALALQTI  300
SKQFRCLRDA ITGQIQATSR SLGEEDTKSG GSRLRLVDHH LRQQRALQQL GMIQHNAWRP  360
QRGLPERSVS VLRAWLFEHF LHPYPKDSDK LMLAKQTGLT RSQVSNWFIN ARVRLWKPMV  420
EEMYLEEMKD HEPNYTDEKG SKSDANENSI SKSSANQESS PTRTGQDYSN DPKPSTVAIP  480
LPSLGNDQKH AAMQQDLKKA RSEELLQPNT MTHSISFDMK SEEMSNRELL MKFMDGRQRA  540
GDQGFSLIAG NTSHGGNFEA YPVAGIGRFD SEQFAPSFSG NGVSLTLGLP QCENFSLSGA  600
QPSFLTSRVE RGLQHDYYQT L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-16364422563Homeobox protein Meis2
3k2a_B8e-16364422563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931060.10.0BEL1-like homeodomain protein 1
RefseqXP_010931061.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-141BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2H3YJL40.0A0A2H3YJL4_PHODC; BEL1-like homeodomain protein 1
STRINGXP_008799712.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-129BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]