PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931016.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 747aa    MW: 80053.6 Da    PI: 5.8903
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931016.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.24.9e-07309329526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd C +aHg
  XP_010931016.1 309 PCPEFRK-GACRLGDLCEYAHG 329
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.66E-1468163IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-884153IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.87584159IPR020683Ankyrin repeat-containing domain
SMARTSM002480.03684114IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.202.1E-1585162IPR020683Ankyrin repeat-containing domain
CDDcd002041.43E-1286162No hitNo description
SMARTSM002480.0093119151IPR002110Ankyrin repeat
PROSITE profilePS5008811.461119154IPR002110Ankyrin repeat
SMARTSM003567.7E-5304330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.638309331IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-5309329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4337367IPR000571Zinc finger, CCCH-type
SMARTSM0035663339362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MCGGPKRIKP SSSPSSEEAR SPYPGKPMNH LTVETDDSFS TLLDLAANND AEGFQRSLDR  60
DPSAVDEVGM WYGRKKGTNL MILLHRTPLM VAATYGSLDV LRLILALSVV DVNRGCGPDN  120
ATVLHCAASG GSPDAVDAVK ILLAAGADPN AVDANGHRPA DVIVVPPMLT DVKVALEQLL  180
GGSCFVSGGE QQLQYIVRSS TSNSNSPPLS SSPEEDGSPS SNSSSSPMNA KFADPPPAAV  240
AEKKEYPIDP SLPDIKNSVY ATDEFRMYSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PEFRKGACRL GDLCEYAHGV FECWLHPAQY RTRLCKDGTS CSRRVCFFAH  360
TNEELRPLYM STGSGVPSPR STASAAMEMA AAMGLMPGSP SSVSALMSPF TPPMSPSTTG  420
VAHSSLFWPQ PNAPALHLAG INLQSSRLRS SLSARDMPVD DFSMMPDFDA QQLYHDLCFS  480
RFGSAAAYHS ARSKALTPSN LDELFSAEIS SSPRYNSDQR SVFSPSHKTA FLNQFQQQQQ  540
GMLSPDNINM FSSKAVDHQQ LPGHSSLLQA SLGIPSPGRM SPHGIEPLSP MSARLAALAL  600
REKQQQTLRC LSSRDLDSGT LPVVGTPVNS SWSKWASPSG TLDWGVNGEE IGQLRQSSSF  660
EMRSGGEEPD LSWVHSLVKE SPPEKLVTAP TTSVGPSAPV PSGGGSDGGG DGDGGEASNA  720
SPQIDGHDQA AVLSAWFEQM QLDQMVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931016.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2H3YPQ30.0A0A2H3YPQ3_PHODC; zinc finger CCCH domain-containing protein 24
STRINGXP_008801953.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]