PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930947.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 392aa    MW: 41204.5 Da    PI: 6.0672
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930947.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.1e-20174223255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  XP_010930947.1 174 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 223
                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.646174231IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-22174232IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-32174232IPR001471AP2/ERF domain
SMARTSM003802.6E-36174237IPR001471AP2/ERF domain
PfamPF008471.3E-13174223IPR001471AP2/ERF domain
PRINTSPR003671.4E-11175186IPR001471AP2/ERF domain
CDDcd000182.67E-14182233No hitNo description
PRINTSPR003671.4E-11197213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MCFKVANPQD DKELDQPVAA SGGTEEEGQV SETAAAMFSP YSQEREISMM VSALTHVVAG  60
GRAGAVGSPS YTSSSSSSPP LMGGQGGGVG VGGMKREREE VMPESLWRYY RGFAAEFGSS  120
PASGESSTII AASEPSPYSL VTATQSSTPP TPASTTEEPS ASAGTEPEQG QRRRYRGVRQ  180
RPWGKWAAEI RDPHKAARVW LGTFETAEAA ARAYDEAALR FRGNRAKLNF PENVHLRPVA  240
PISPAPQLPA PTPPPVTLLE SQPFARLQAS GASRDYVEYS RLLQGTGEYR TFSPTALLEQ  300
MMYSSSSMAS LLPNTSSLAS HSFATSSVSS SSAAPPFSSS SSSAFPLHYP LGGTEQQRGY  360
LRPPGSGIGG SGAGWPAPPS TDSGRDPPSS SQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23173235467ATERF1
3gcc_A2e-23173235467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930947.10.0ethylene-responsive transcription factor ABR1
TrEMBLA0A2H3XBT81e-130A0A2H3XBT8_PHODC; ethylene-responsive transcription factor ABR1-like
STRINGXP_008781454.11e-130(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5084822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-19ethylene response factor 110