PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010930849.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GATA | ||||||||
Protein Properties | Length: 187aa MW: 21149.9 Da PI: 8.2922 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.2 | 4.8e-18 | 112 | 146 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C +t+Tp+WR gp g+ tLCnaCG+++++ +l XP_010930849.1 112 CIHCLATDTPQWRAGPAGPGTLCNACGIRFKSGRL 146 99*****************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.8E-14 | 106 | 160 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.044 | 106 | 142 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.33E-14 | 108 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.9E-14 | 110 | 144 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.27E-13 | 111 | 161 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 112 | 137 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.1E-15 | 112 | 146 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MTLSHRVFQS LYLDESLEPD TEDPAEEELA VPNDPLDELD WQTPLFGDVT NMLRSLPTPK 60 RTQNNDVLDL RREICTKRVP RKPRRQCSGR RIWSLEPPTL SCSGARENSR SCIHCLATDT 120 PQWRAGPAGP GTLCNACGIR FKSGRLLPQY RPSTSPTFKG RLHSNRHKKV MKIREQSGDA 180 DIADLDV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010930849.1 | 1e-137 | GATA transcription factor 7-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5962 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 1e-32 | GATA transcription factor 7 |