PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930779.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 369aa    MW: 41992.9 Da    PI: 6.9263
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930779.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002579101323
                     ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                     C+   Cgk+F +   L++H   H
  XP_010930779.1  79 CSyeGCGKTFIDAGALRKHAHIH 101
                     77779**************9877 PP
2zf-C2H216.42.5e-05106130123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C+   Cgk F ++s LkrH   H
  XP_010930779.1 106 YVCHfeGCGKKFLDSSKLKRHFLIH 130
                     9********************8877 PP
3zf-C2H221.27.6e-07136160123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + Cp   Cgk Fs   nL+ H+rtH
  XP_010930779.1 136 FICPheGCGKAFSLDFNLRAHMRTH 160
                     78**********************9 PP
4zf-C2H211.10.0013166190123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + Cp   Cgk +++   Lk+Hi+ H
  XP_010930779.1 166 HICPypECGKKYTHECKLKSHIKAH 190
                     679999*****************96 PP
5zf-C2H216.13.2e-05229254123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     y Cp   Cgk + + + L+ H+r+ H
  XP_010930779.1 229 YACPyeGCGKAYIHEYKLNLHLRReH 254
                     89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.6E-1472103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003177101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.76277106IPR007087Zinc finger, C2H2
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576672.76E-880130No hitNo description
Gene3DG3DSA:3.30.160.601.7E-14104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028106130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.921106135IPR007087Zinc finger, C2H2
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576678.66E-14117169No hitNo description
Gene3DG3DSA:3.30.160.601.4E-19127158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.7E-4136160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.528136165IPR007087Zinc finger, C2H2
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-10159192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.13166190IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45166195IPR007087Zinc finger, C2H2
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-9224252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.71E-6224252No hitNo description
SMARTSM003550.0029229254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.011229259IPR007087Zinc finger, C2H2
PROSITE patternPS000280231254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDLQTNHSMF ERRQPAKDRT PAVRWFKEWV PQDMVATGGK CSLLKWVTED MMKALREKSK  60
EPQTEEPKPE PTTEVLFLCS YEGCGKTFID AGALRKHAHI HGERQYVCHF EGCGKKFLDS  120
SKLKRHFLIH TGERDFICPH EGCGKAFSLD FNLRAHMRTH SLENYHICPY PECGKKYTHE  180
CKLKSHIKAH HEKNSVIDGI KHTAPADKLH NTPKTPVVAY GSASSDRPYA CPYEGCGKAY  240
IHEYKLNLHL RREHPGHNSE ENGKHAPAAD HAMDEASDQD AYIAKGGGGK NNKRSKPNLI  300
QKMPPAKVPN RKDSNLAPAN VSTVKKQWAS KEVYEEDSEE TEEDRDNVEE DGWRYQGVNG  360
DDEETEDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C8e-35702502118PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930779.10.0zinc finger transcription factor YY1
SwissprotQ2V3L31e-137YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2H3XC850.0A0A2H3XC85_PHODC; LOW QUALITY PROTEIN: zinc finger transcription factor YY1-like
STRINGXP_008781553.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-131C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]