PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010930511.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 692aa MW: 79391.8 Da PI: 7.9704

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010930511.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.7	1.7e-22	76	169	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+eYAk++GFs+r+++++ + + t+r fvC + g++ ++ ++++k +r+r+++r+gC+a ++++k++ +w+vt ++ +HnHel XP_010930511.1 76 EFYSEYAKRCGFSIRRHRTEGKdGIGKGLTRRYFVCHRAGNTPTKASNDNKPQRNRKSSRCGCQAYMRISKSTdigVTEWRVTGFSDHHNHELL 169 6************999887735667799**************9******************9988789************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-19	76	169	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-20	292	383	IPR018289	MULE transposase domain
Pfam	PF04434	4.1E-9	568	604	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.631	569	604	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-7	579	606	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MRGFLPGYCS DAKVISIEAR AMLDVYDDPS EQRSLSLDDT SSAEESPDDT RLSLETSIDA 60 IPYIGQRFVT HDAAYEFYSE YAKRCGFSIR RHRTEGKDGI GKGLTRRYFV CHRAGNTPTK 120 ASNDNKPQRN RKSSRCGCQA YMRISKSTDI GVTEWRVTGF SDHHNHELLE PNQVRFLPAY 180 RTISDADKNR ILMFAKSGIS VQQMMRLMEL EKCVEPGYLP FTEKDVRNLI QSFKKVDQDE 240 ESIDLLKMCR NIKEKDPNFK YDFTIDANNR LENIAWSYSS SVQSYEIFGD AVVFDTTHRL 300 TAFDMPLGIW VGMNNYGMPC FHGCVLLREE NVRSFSWALK VFLSFMNGKA PQTILTDQNM 360 CLKEAIAIEM PSTKHALCIW LIVAKFPSWF NAVLGERYNE WKAEFYRLYN LESIDDFELG 420 WREMVNSFGL HTNRHITNLF AFRSLWALPY LRNHFFAGMT TTGLSKSINA FIQRFLSAQT 480 RLAHFIEQVA VAVDFRDQAG EHQTMQQNLQ NICLKTGAPM EAHAAAVLTP YAFCKLQDEL 540 VMAAHYASFQ IEEGCFLVRH HTKMDGGRKV IWIPREELLS CSCHMFEFSG ILCRHALRVL 600 STLNCFQIPD RYLPIRWRRV NSLPSKLVQA AAASEKTERV QALQSMVSVL ISEAAKSKER 660 MDMASKEISI LLSRIREQPI SLHGSRDCVH RS

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MRGFLPGYCS DAKVISIEAR AMLDVYDDPS EQRSLSLDDT SSAEESPDDT RLSLETSIDA  60
IPYIGQRFVT HDAAYEFYSE YAKRCGFSIR RHRTEGKDGI GKGLTRRYFV CHRAGNTPTK  120
ASNDNKPQRN RKSSRCGCQA YMRISKSTDI GVTEWRVTGF SDHHNHELLE PNQVRFLPAY  180
RTISDADKNR ILMFAKSGIS VQQMMRLMEL EKCVEPGYLP FTEKDVRNLI QSFKKVDQDE  240
ESIDLLKMCR NIKEKDPNFK YDFTIDANNR LENIAWSYSS SVQSYEIFGD AVVFDTTHRL  300
TAFDMPLGIW VGMNNYGMPC FHGCVLLREE NVRSFSWALK VFLSFMNGKA PQTILTDQNM  360
CLKEAIAIEM PSTKHALCIW LIVAKFPSWF NAVLGERYNE WKAEFYRLYN LESIDDFELG  420
WREMVNSFGL HTNRHITNLF AFRSLWALPY LRNHFFAGMT TTGLSKSINA FIQRFLSAQT  480
RLAHFIEQVA VAVDFRDQAG EHQTMQQNLQ NICLKTGAPM EAHAAAVLTP YAFCKLQDEL  540
VMAAHYASFQ IEEGCFLVRH HTKMDGGRKV IWIPREELLS CSCHMFEFSG ILCRHALRVL  600
STLNCFQIPD RYLPIRWRRV NSLPSKLVQA AAASEKTERV QALQSMVSVL ISEAAKSKER  660
MDMASKEISI LLSRIREQPI SLHGSRDCVH RS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930511.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_019708337.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_029122508.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2H3ZIK2	0.0	A0A2H3ZIK2_PHODC; protein FAR1-RELATED SEQUENCE 11
STRING	XP_008776582.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15171	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]