PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010930309.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22555.5 Da PI: 9.1201 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 55.2 | 2e-17 | 32 | 132 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+C + rr+C +dC++a++fp e+p + + +G + ++l l++e+ a++slvy+A +r + a+++i +lq+q+ l++ + XP_010930309.1 32 PCAVCEHPRRRCRRDCPFARHFPGERPTCLDSLCLAYGPQLAARMLGVLNRERWIPAANSLVYNAILHLRHRENEAFEIIARLQNQVVDLQVSNS 126 7********************************************************************************************99 PP DUF260 96 llkeel 101 ll++++ XP_010930309.1 127 LLRHQI 132 999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.782 | 31 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-15 | 32 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSNITTESSM ESSPPPPPPP PPPPPPVRHR APCAVCEHPR RRCRRDCPFA RHFPGERPTC 60 LDSLCLAYGP QLAARMLGVL NRERWIPAAN SLVYNAILHL RHRENEAFEI IARLQNQVVD 120 LQVSNSLLRH QIAARERTRQ RPPSIYDLIE WPTNDGLAGV NEPAGGGRPP ASGPGEGSSM 180 PSGGQHGAPS SSEYNNRPRI GPPKSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010930309.1 | 1e-147 | LOB domain-containing protein 11 | ||||
STRING | XP_008801115.1 | 1e-50 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP50843 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 1e-07 | LOB domain-containing protein 13 |