PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010930278.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 835aa MW: 95529 Da PI: 6.9714

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010930278.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.9	7.1e-18	49	132	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++Y+++vGF+vr ++++ + + g+ ++ +f+Cs+ gk +++ + r++ +t+C+a++ +k++ dg +v+k++leHnH++ XP_010930278.1 49 EFYRQYGRHVGFDVRLKRTTLN-KAGQYYTVEFMCSRGGKGRTDPSY-----LARPTAKTNCQATILLKLHGDGLLHVKKVNLEHNHPVD 132 6**************99998.6667**********999888.....899******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-14	49	132	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.8E-31	250	343	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.582	536	572	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.8E-6	545	568	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.2E-4	547	574	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MTDTSAVASS SCEEPKNNMQ NGDCKTSGGN DDRTPQVGMT FRSYDEVSEF YRQYGRHVGF 60 DVRLKRTTLN KAGQYYTVEF MCSRGGKGRT DPSYLARPTA KTNCQATILL KLHGDGLLHV 120 KKVNLEHNHP VDPSMVKLKK HKRKMSSGMG EHHEENEKSI IRRIRRCQPS FHEGCAEGLT 180 SGEDCEALSR RGHLMLQSGD ADAMYKFFMH MQTQNPNFFY SIDFDGEGRL RNLLWVDAMS 240 RAAYKYFGDV LLFDTTYLTN DYDLPLVLFL GVNNHSQLIL LGCGLLSEET AETYFWLFKT 300 WLACMSSHPP NALITDHCEA IKNAAAKVFP GACHRLCLWQ VMKRISETLK GNERCKEIKK 360 ALEKVIYSSY RANEFEEDWI KTSEKYGLDN EWLSWLYENR HSWVPLYLKD TFWAGMSMTR 420 RGPSMCAFFD GFIYPGTSLK QFLSLYETAL QSKYEKEAQA DYESFNRGRN LISKFYMEEQ 480 LFELYTHNMF KEFQEELKTT IYCNVSLVKD DRPVSTFEIK ESIFLEDGSV TEYKGFEVSY 540 NSEEQEIQCL CRSFQFRGIL CRHALSVFKL QVHVIPSRYI VDRWRKDVKL LHALAQSSDD 600 SVANNRLERY NNLVIRCFQL VEVGMTSDDR YRLALNATGE LEKFLLNNST CGNMQVKIVP 660 CETKTNENAE NPAVSQLGTT EGDKVLNSLQ GKRRGRPPKK RKESDTDTSA LSDKKMNDLR 720 TLCVESQNER LLVAPPTLHI GSNIGAQESL VLMGEVSPND FSLGSHYGVQ VDHQHQNGSQ 780 SRIFSSDMFQ GQFAETVENQ SRMQWIHPHM LQEAQLPTAT PDQTTGRGGG IQLQN

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MTDTSAVASS SCEEPKNNMQ NGDCKTSGGN DDRTPQVGMT FRSYDEVSEF YRQYGRHVGF  60
DVRLKRTTLN KAGQYYTVEF MCSRGGKGRT DPSYLARPTA KTNCQATILL KLHGDGLLHV  120
KKVNLEHNHP VDPSMVKLKK HKRKMSSGMG EHHEENEKSI IRRIRRCQPS FHEGCAEGLT  180
SGEDCEALSR RGHLMLQSGD ADAMYKFFMH MQTQNPNFFY SIDFDGEGRL RNLLWVDAMS  240
RAAYKYFGDV LLFDTTYLTN DYDLPLVLFL GVNNHSQLIL LGCGLLSEET AETYFWLFKT  300
WLACMSSHPP NALITDHCEA IKNAAAKVFP GACHRLCLWQ VMKRISETLK GNERCKEIKK  360
ALEKVIYSSY RANEFEEDWI KTSEKYGLDN EWLSWLYENR HSWVPLYLKD TFWAGMSMTR  420
RGPSMCAFFD GFIYPGTSLK QFLSLYETAL QSKYEKEAQA DYESFNRGRN LISKFYMEEQ  480
LFELYTHNMF KEFQEELKTT IYCNVSLVKD DRPVSTFEIK ESIFLEDGSV TEYKGFEVSY  540
NSEEQEIQCL CRSFQFRGIL CRHALSVFKL QVHVIPSRYI VDRWRKDVKL LHALAQSSDD  600
SVANNRLERY NNLVIRCFQL VEVGMTSDDR YRLALNATGE LEKFLLNNST CGNMQVKIVP  660
CETKTNENAE NPAVSQLGTT EGDKVLNSLQ GKRRGRPPKK RKESDTDTSA LSDKKMNDLR  720
TLCVESQNER LLVAPPTLHI GSNIGAQESL VLMGEVSPND FSLGSHYGVQ VDHQHQNGSQ  780
SRIFSSDMFQ GQFAETVENQ SRMQWIHPHM LQEAQLPTAT PDQTTGRGGG IQLQN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930278.1	0.0	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_029122420.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2H3ZW78	0.0	A0A2H3ZW78_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRING	XP_008800785.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-126	FAR1-related sequence 6