PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010929994.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 479aa MW: 52291.7 Da PI: 7.7807 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33 | 1e-10 | 104 | 126 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C ++ ++GtC++G++CkF+H+ XP_010929994.1 104 PDCTYYVKNGTCRFGSSCKFNHP 126 68********************8 PP | |||||||
2 | zf-CCCH | 22.7 | 1.7e-07 | 200 | 222 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++ G Ck+G Ck+ H p XP_010929994.1 200 ECKYYSMPGGCKFGKACKYVHHP 222 6********************75 PP | |||||||
3 | zf-CCCH | 31.9 | 2.3e-10 | 241 | 266 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG Ck+ +Ck++H+ XP_010929994.1 241 PGERECPYYMRTGSCKFATNCKYHHP 266 5789*********************9 PP | |||||||
4 | zf-CCCH | 25 | 3.3e-08 | 383 | 409 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++ G Ck+ CkF+H++ XP_010929994.1 383 PGQPECQYFMKHGVCKFKTACKFHHPK 409 5789*********************96 PP | |||||||
5 | zf-CCCH | 35.4 | 1.8e-11 | 430 | 454 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++ r+G CkyG++CkF H+ XP_010929994.1 430 DQPVCTHYNRFGVCKYGPSCKFDHP 454 6899********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.643 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.0E-5 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-6 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-8 | 104 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 106 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.54 | 195 | 223 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.067 | 195 | 222 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.33E-5 | 199 | 225 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-5 | 200 | 221 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 201 | 222 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 240 | 268 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-5 | 240 | 267 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-7 | 242 | 266 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 243 | 267 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.704 | 382 | 410 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 382 | 409 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-5 | 384 | 409 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-5 | 386 | 410 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 428 | 455 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.403 | 428 | 456 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.03E-5 | 429 | 455 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 430 | 454 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.7E-5 | 433 | 453 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MAVSEAEVVP KTEELGLGLA TAASSPSSPS DSFVEALTGE FASLKLEKKS AEEAGDQDNT 60 GAGDQEEITG DENGGVVEKD SGSPGKEKEG KEERFRYPQR LDAPDCTYYV KNGTCRFGSS 120 CKFNHPARRK RNKVKSKKPF EANQAVKEEQ KEPIPKVGQT ESKVDKKEEK ASSDMVGQME 180 CEATEEKGKE TLSERAGQME CKYYSMPGGC KFGKACKYVH HPGKLENNSV QLNFLGLPIR 240 PGERECPYYM RTGSCKFATN CKYHHPDPTA VGGQDPRSGH RNSEPPQHGL GAPQVPMTWP 300 VQRMSNEPIS FLNASPSYVP GMILPPQGFH SNPEWNGYQA PVSPLFPPDI HARNSASTIN 360 HKTNKGDIPV SQQVPVDEYP ERPGQPECQY FMKHGVCKFK TACKFHHPKT RPQTVPVGVL 420 SPVGLPLKPD QPVCTHYNRF GVCKYGPSCK FDHPIGHGSS ASAGVVVSGQ IATPNNATT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 137 | RRKRNKVKSKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00582 | DAP | Transfer from AT5G63260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010929994.1 | 0.0 | zinc finger CCCH domain-containing protein 65 isoform X2 | ||||
TrEMBL | A0A2H3YAU2 | 0.0 | A0A2H3YAU2_PHODC; zinc finger CCCH domain-containing protein 65 isoform X1 | ||||
STRING | XP_008796043.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 4e-76 | C3H family protein |