PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010929836.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 26642.8 Da PI: 9.8949 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.8 | 9.7e-12 | 111 | 152 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa+++++a+ XP_010929836.1 111 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 152 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.834 | 86 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-6 | 110 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-4 | 110 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-8 | 110 | 155 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-6 | 113 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MVSIRRRRYL GLCTGKSSVP VELPKPADNG HTLENSNQNV KPFSVYPMPS DNLSLQKPLK 60 INVSEALPGS SNASGSSTSK EEANHYYPGK QIKRRKRHRR KHFEDQEQCI MRGVYFKNMK 120 WQAAIKVDKK QIHLGTVGSQ EEAARLYDRA AFMCGREPNF ELSEEEKQEL RQYKWDDFLA 180 VTRNAINNKK HQKRLGADRR KKPENQLQSN DGEHEQGTHA SSASDDGDAD TSVS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 188 | 202 | KKHQKRLGADRRKKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010929836.1 | 1e-177 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_010929837.1 | 1e-177 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_010929838.1 | 1e-177 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A2H3YT59 | 1e-134 | A0A2H3YT59_PHODC; ethylene-responsive transcription factor-like protein At4g13040 isoform X3 | ||||
TrEMBL | A0A2H3YU11 | 1e-134 | A0A2H3YU11_PHODC; ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
STRING | XP_008803499.1 | 1e-135 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 1e-45 | ERF family protein |