PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010929828.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 380aa MW: 41258.5 Da PI: 8.8804 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.5 | 9.6e-13 | 18 | 42 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_010929828.1 18 QPECQYYLKTGTCKFGATCKFHHPK 42 799********************96 PP | |||||||
2 | zf-CCCH | 33.8 | 5.9e-11 | 64 | 88 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++ rtG+Ck+G++CkF+H++ XP_010929828.1 64 EKECAYYIRTGQCKFGNTCKFHHPQ 88 679********************97 PP | |||||||
3 | zf-CCCH | 39.5 | 9.3e-13 | 224 | 249 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ XP_010929828.1 224 DQPECQFYMKTGDCKFGAVCKFHHPR 249 689*********************96 PP | |||||||
4 | zf-CCCH | 38.3 | 2.3e-12 | 269 | 295 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_010929828.1 269 PGEPLCVFYSRYGICKFGPNCKFDHPM 295 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 6.3E-6 | 15 | 42 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 15 | 43 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-10 | 18 | 42 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 19 | 44 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-5 | 21 | 41 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-4 | 61 | 88 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-7 | 61 | 89 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.953 | 61 | 89 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-8 | 64 | 88 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-4 | 67 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.53 | 222 | 250 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-5 | 222 | 249 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 224 | 249 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 225 | 252 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-5 | 228 | 250 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.9E-8 | 268 | 295 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.953 | 268 | 296 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-9 | 270 | 295 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-6 | 271 | 296 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-4 | 273 | 293 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 380 aa Download sequence Send to blast |
MAIAAARIKG GYPERVGQPE CQYYLKTGTC KFGATCKFHH PKDKAGIAGR VQLNILGYPL 60 RPNEKECAYY IRTGQCKFGN TCKFHHPQPS NAMVALRGSP VYPPVHSSTT PGQQSYPGGL 120 TNWSLSRTSF IPSPRWQDPS SYTQLILPQG LVQVPGWNPY PGQMGSSSPD SQQQTPGAAQ 180 YYSTTHQSET SAGAQGTFSS YRPGSIPMGV YALQRENIFP ERPDQPECQF YMKTGDCKFG 240 AVCKFHHPRE RLVPVPNCLL SPLGLPLRPG EPLCVFYSRY GICKFGPNCK FDHPMGTFTY 300 GISTSSTADV PTVRRLIGSS SGPPALTSSS EGPADAGMGK PRDSRRLSLS ESRQIGTGDE 360 NLEAEASHTS SSIGQVSSFP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_029122313.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X4 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2H3ZEL0 | 0.0 | A0A2H3ZEL0_PHODC; LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like | ||||
STRING | XP_008812314.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-126 | zinc finger protein 1 |