PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010929827.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 430aa MW: 47051.1 Da PI: 8.8541 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.6 | 1.2e-09 | 21 | 47 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++ rtG C++G +CkF+H+p XP_010929827.1 21 PGEADCGYYIRTGLCRFGMTCKFNHPP 47 57899********************97 PP | |||||||
2 | zf-CCCH | 39.3 | 1.1e-12 | 68 | 92 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_010929827.1 68 QPECQYYLKTGTCKFGATCKFHHPK 92 799********************96 PP | |||||||
3 | zf-CCCH | 33.6 | 6.8e-11 | 114 | 138 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++ rtG+Ck+G++CkF+H++ XP_010929827.1 114 EKECAYYIRTGQCKFGNTCKFHHPQ 138 679********************97 PP | |||||||
4 | zf-CCCH | 39.3 | 1.1e-12 | 274 | 299 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ XP_010929827.1 274 DQPECQFYMKTGDCKFGAVCKFHHPR 299 689*********************96 PP | |||||||
5 | zf-CCCH | 38.1 | 2.6e-12 | 319 | 345 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_010929827.1 319 PGEPLCVFYSRYGICKFGPNCKFDHPM 345 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0016 | 20 | 47 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.765 | 20 | 48 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 22 | 47 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-5 | 24 | 48 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-6 | 65 | 92 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 65 | 93 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-10 | 68 | 92 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 69 | 94 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-5 | 71 | 91 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-4 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.07E-6 | 111 | 139 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.953 | 111 | 139 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.7E-8 | 114 | 138 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-4 | 117 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-5 | 272 | 299 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.53 | 272 | 300 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 274 | 299 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-6 | 275 | 302 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-5 | 278 | 300 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.9E-8 | 318 | 345 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.953 | 318 | 346 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-9 | 320 | 345 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-6 | 321 | 346 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-4 | 323 | 343 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MWQMNLRGSE SMESGPYPER PGEADCGYYI RTGLCRFGMT CKFNHPPNRR LAIAAARIKG 60 GYPERVGQPE CQYYLKTGTC KFGATCKFHH PKDKAGIAGR VQLNILGYPL RPNEKECAYY 120 IRTGQCKFGN TCKFHHPQPS NAMVALRGSP VYPPVHSSTT PGQQSYPGGL TNWSLSRTSF 180 IPSPRWQDPS SYTQLILPQG LVQVPGWNPY PGQMGSSSPD SQQQTPGAAQ YYSTTHQSET 240 SAGAQGTFSS YRPGSIPMGV YALQRENIFP ERPDQPECQF YMKTGDCKFG AVCKFHHPRE 300 RLVPVPNCLL SPLGLPLRPG EPLCVFYSRY GICKFGPNCK FDHPMGTFTY GISTSSTADV 360 PTVRRLIGSS SGPPALTSSS EGPADAGMGK PRDSRRLSLS ESRQIGTGDE NLEAEASHTS 420 SSIGQVSSFP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010929825.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2H3ZEL0 | 0.0 | A0A2H3ZEL0_PHODC; LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like | ||||
STRING | XP_008812314.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-158 | zinc finger protein 1 |