PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929826.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 439aa    MW: 48004 Da    PI: 8.3665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929826.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-095177127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C ++ rtG C++G +CkF+H+p
  XP_010929826.1 51 PGEADCGYYIRTGLCRFGMTCKFNHPP 77
                    57899********************97 PP
2zf-CCCH31.14.2e-1082101827
                     GGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                     ++++tGtCk+G++CkF+H++
  XP_010929826.1  82 YYLKTGTCKFGATCKFHHPK 101
                     8*****************96 PP
3zf-CCCH33.57e-11123147327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C ++ rtG+Ck+G++CkF+H++
  XP_010929826.1 123 EKECAYYIRTGQCKFGNTCKFHHPQ 147
                     679********************97 PP
4zf-CCCH39.31.1e-12283308227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+f+++tG Ck+G+ CkF+H++
  XP_010929826.1 283 DQPECQFYMKTGDCKFGAVCKFHHPR 308
                     689*********************96 PP
5zf-CCCH382.7e-12328354127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_010929826.1 328 PGEPLCVFYSRYGICKFGPNCKFDHPM 354
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7655078IPR000571Zinc finger, CCCH-type
SMARTSM003560.00165077IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-65277IPR000571Zinc finger, CCCH-type
SMARTSM003560.0578101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-482100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.47482102IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-882101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953120148IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-4120147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-6120148IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-8123147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4126146IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5281308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53281309IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9283308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6284311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5287309IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-8327354IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953327355IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-9329354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6330355IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4332352IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEYEGTGVQM HGVRPPAAMT EGSSSLDEEA MWQMNLRGSE SMESGPYPER PGEADCGYYI  60
RTGLCRFGMT CKFNHPPNRR LYYLKTGTCK FGATCKFHHP KDKAGIAGRV QLNILGYPLR  120
PNEKECAYYI RTGQCKFGNT CKFHHPQPSN AMVALRGSPV YPPVHSSTTP GQQSYPGGLT  180
NWSLSRTSFI PSPRWQDPSS YTQLILPQGL VQVPGWNPYP GQMGSSSPDS QQQTPGAAQY  240
YSTTHQSETS AGAQGTFSSY RPGSIPMGVY ALQRENIFPE RPDQPECQFY MKTGDCKFGA  300
VCKFHHPRER LVPVPNCLLS PLGLPLRPGE PLCVFYSRYG ICKFGPNCKF DHPMGTFTYG  360
ISTSSTADVP TVRRLIGSSS GPPALTSSSE GPADAGMGKP RDSRRLSLSE SRQIGTGDEN  420
LEAEASHTSS SIGQVSSFP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029122312.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2H3ZEL00.0A0A2H3ZEL0_PHODC; LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like
STRINGXP_008812314.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-143zinc finger protein 1