PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010929825.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 460aa MW: 50200.5 Da PI: 8.4165 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.5 | 1.3e-09 | 51 | 77 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++ rtG C++G +CkF+H+p XP_010929825.1 51 PGEADCGYYIRTGLCRFGMTCKFNHPP 77 57899********************97 PP | |||||||
2 | zf-CCCH | 39.1 | 1.2e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_010929825.1 98 QPECQYYLKTGTCKFGATCKFHHPK 122 799********************96 PP | |||||||
3 | zf-CCCH | 33.4 | 7.4e-11 | 144 | 168 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++ rtG+Ck+G++CkF+H++ XP_010929825.1 144 EKECAYYIRTGQCKFGNTCKFHHPQ 168 679********************97 PP | |||||||
4 | zf-CCCH | 39.2 | 1.2e-12 | 304 | 329 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ XP_010929825.1 304 DQPECQFYMKTGDCKFGAVCKFHHPR 329 689*********************96 PP | |||||||
5 | zf-CCCH | 38 | 2.9e-12 | 349 | 375 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_010929825.1 349 PGEPLCVFYSRYGICKFGPNCKFDHPM 375 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.765 | 50 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0016 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-6 | 52 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-5 | 54 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-6 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-10 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 99 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 101 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.16E-6 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-4 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.953 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-8 | 144 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-4 | 147 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-5 | 302 | 329 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.53 | 302 | 330 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-9 | 304 | 329 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-6 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 308 | 330 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.9E-8 | 348 | 375 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.953 | 348 | 376 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-9 | 350 | 375 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-6 | 351 | 376 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 353 | 373 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MEYEGTGVQM HGVRPPAAMT EGSSSLDEEA MWQMNLRGSE SMESGPYPER PGEADCGYYI 60 RTGLCRFGMT CKFNHPPNRR LAIAAARIKG GYPERVGQPE CQYYLKTGTC KFGATCKFHH 120 PKDKAGIAGR VQLNILGYPL RPNEKECAYY IRTGQCKFGN TCKFHHPQPS NAMVALRGSP 180 VYPPVHSSTT PGQQSYPGGL TNWSLSRTSF IPSPRWQDPS SYTQLILPQG LVQVPGWNPY 240 PGQMGSSSPD SQQQTPGAAQ YYSTTHQSET SAGAQGTFSS YRPGSIPMGV YALQRENIFP 300 ERPDQPECQF YMKTGDCKFG AVCKFHHPRE RLVPVPNCLL SPLGLPLRPG EPLCVFYSRY 360 GICKFGPNCK FDHPMGTFTY GISTSSTADV PTVRRLIGSS SGPPALTSSS EGPADAGMGK 420 PRDSRRLSLS ESRQIGTGDE NLEAEASHTS SSIGQVSSFP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010929825.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2H3ZEL0 | 0.0 | A0A2H3ZEL0_PHODC; LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like | ||||
STRING | XP_008812314.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-161 | zinc finger protein 1 |