PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010929824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 263aa MW: 29720 Da PI: 9.2082 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30 | 8.7e-10 | 42 | 68 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++ rtG C++G +CkF+H+p XP_010929824.1 42 PGEPDCAYYIRTGLCRFGMTCKFNHPP 68 5789*********************97 PP | |||||||
2 | zf-CCCH | 40.1 | 6e-13 | 89 | 113 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_010929824.1 89 QPECQYYLKTGTCKFGATCKFHHPK 113 799********************96 PP | |||||||
3 | zf-CCCH | 33.8 | 5.9e-11 | 136 | 159 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++ rtG+Ck+G++CkF+H++ XP_010929824.1 136 KECAYYIRTGQCKFGNTCKFHHPQ 159 68********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0012 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.591 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 46 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-6 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 86 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-10 | 89 | 113 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.16E-6 | 90 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-5 | 92 | 112 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-7 | 131 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-4 | 134 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-8 | 136 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 138 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 263 aa Download sequence Send to blast |
MHGARPPAAM TEGSSSLDEE AMWQMNLRGS ESMESGPYPE RPGEPDCAYY IRTGLCRFGM 60 TCKFNHPPNR SLAIAAARIK GGYPERVGQP ECQYYLKTGT CKFGATCKFH HPKDKAGMAG 120 RVQLNILGYP LRLNEKECAY YIRTGQCKFG NTCKFHHPQP SNAMVALRGS PVYPPVHSLT 180 TPGQQSYPGG LTNWSLSRTS FIPSPRWQDP SSYTQLILPQ GLVQVPGWNP YPEMVDYERM 240 DQHCFRYCFQ KKTKLCRSKY LAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010929824.2 | 1e-174 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 1e-124 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2H3ZEL0 | 1e-164 | A0A2H3ZEL0_PHODC; LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like | ||||
STRING | XP_008812314.1 | 1e-165 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-104 | zinc finger protein 1 |