PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010929563.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TCP

Protein Properties

Length: 313aa MW: 33164.8 Da PI: 9.8051

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010929563.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124	1.6e-38	87	168	2	83
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 a+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLl qa+pai+++tg+++++as+ ++++s +a+ XP_010929563.1 87 APRRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLHQAEPAIIAATGSGTIPASALSSSTSTPAAG 168 7899*****************************************************************7662222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-32	92	172	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.737	93	147	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MDPRGSSKVP PEAPKFHQAL GLPRGDKREH LTRLGSTSSS SSSSNLRHQE SSSSSRREDL 60 QIVMMTSAAP PTTTVTEKEE QQRRQLAPRR SSNKDRHTKV DGRGRRIRMP ALCAARIFQL 120 TRELGHKSDG ETIQWLLHQA EPAIIAATGS GTIPASALSS STSTPAAGST HQTNWTGFTA 180 GNTTTTTTGL GRPNHQGLWE PPAAGGFNSG FLQSAAAVPA MSNIGFHGLE LPGGAGGGMG 240 AMSFLSMLSG QGQQLPGLEL GLSQDGSMGG VINSQVLSHF YQQMEQGRGG EDGQLHHQQP 300 LLSPKENSQE STQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010929563.1	0.0	transcription factor TCP20
Refseq	XP_029122280.1	0.0	transcription factor TCP20
Refseq	XP_029122281.1	0.0	transcription factor TCP20
Swissprot	Q9LSD5	6e-57	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A2H3X0M1	1e-143	A0A2H3X0M1_PHODC; transcription factor TCP20-like
STRING	XP_008776532.1	1e-144	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	2e-41	TCP family protein

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]