PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010929445.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 589aa MW: 63844.8 Da PI: 7.9906

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010929445.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.2	3.8e-33	30	84	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ekAtPkti+++m+vkgLtl h+kSHLQkYRl XP_010929445.1 30 KPRLRWTADLHERFVDAVAQLGGPEKATPKTIMRTMGVKGLTLFHLKSHLQKYRL 84 79****************************************************8 PP
2	G2-like	101.4	6e-32	296	350	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+ LH+rFv+av+qLGG+e+AtPk +l++m+v gLt++hvkSHLQkYRl XP_010929445.1 296 RQRLRWTHGLHQRFVDAVTQLGGPERATPKGVLKTMGVTGLTIYHVKSHLQKYRL 350 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.961	27	87	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-31	27	85	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	30	85	IPR006447	Myb domain, plants
SuperFamily	SSF46689	7.35E-16	30	86	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-8	32	83	IPR001005	SANT/Myb domain
Pfam	PF14379	5.4E-22	125	170	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
PROSITE profile	PS51294	11.972	293	353	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-15	295	350	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.0E-30	295	351	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.4E-24	297	351	IPR006447	Myb domain, plants
Pfam	PF00249	5.9E-7	298	349	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-22	386	432	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence Send to blast
MFSGVIHRPE ASVSQEEAHG PRLVLTADPK PRLRWTADLH ERFVDAVAQL GGPEKATPKT 60 IMRTMGVKGL TLFHLKSHLQ KYRLGKQSGK EMTDPSKDAS YPSEALSNSG LSPRVPTPDV 120 NEGQEVKEAL RAQMEVQRRL HEQVEVQKHV QIRMEAYQKY IDSLLEKACK IASEQIASSG 180 LNATGHDPPD LATGIICSPF DPLSPSVFHQ LSVGAISLHS PGGKTSPSSA IEGCLFYQKA 240 PEVKRKPCMY QPKPISNLGS AHSNPLACDQ PIELTGNNIG PCSGGTNQNN PNLASRQRLR 300 WTHGLHQRFV DAVTQLGGPE RATPKGVLKT MGVTGLTIYH VKSHLQKYRL AKYIPESSSD 360 GRFSGTTAAK KDSGDLLSGL ESSSGMQITE ALKLQMEVQK RLHEQLEVQR QLQLRIEAQG 420 KYLKKIVEEQ QRLSGVLAET PGAGFPALIS GNQCLDSDKT DPSTPAPTSE SPLQDKAASG 480 EHGGSGGLFK SLSHDDSFLS RHEPLTPDSS CRASSPSESP KHERSTKRQR GPGNVKTELV 540 FAHHILESSS GSDFQQPCSI FPTRGGPFDS SGTSLCDDDR LENGSGSDV

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence Send to blast

MFSGVIHRPE ASVSQEEAHG PRLVLTADPK PRLRWTADLH ERFVDAVAQL GGPEKATPKT  60
IMRTMGVKGL TLFHLKSHLQ KYRLGKQSGK EMTDPSKDAS YPSEALSNSG LSPRVPTPDV  120
NEGQEVKEAL RAQMEVQRRL HEQVEVQKHV QIRMEAYQKY IDSLLEKACK IASEQIASSG  180
LNATGHDPPD LATGIICSPF DPLSPSVFHQ LSVGAISLHS PGGKTSPSSA IEGCLFYQKA  240
PEVKRKPCMY QPKPISNLGS AHSNPLACDQ PIELTGNNIG PCSGGTNQNN PNLASRQRLR  300
WTHGLHQRFV DAVTQLGGPE RATPKGVLKT MGVTGLTIYH VKSHLQKYRL AKYIPESSSD  360
GRFSGTTAAK KDSGDLLSGL ESSSGMQITE ALKLQMEVQK RLHEQLEVQR QLQLRIEAQG  420
KYLKKIVEEQ QRLSGVLAET PGAGFPALIS GNQCLDSDKT DPSTPAPTSE SPLQDKAASG  480
EHGGSGGLFK SLSHDDSFLS RHEPLTPDSS CRASSPSESP KHERSTKRQR GPGNVKTELV  540
FAHHILESSS GSDFQQPCSI FPTRGGPFDS SGTSLCDDDR LENGSGSDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-21	30	353	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	30	353	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	30	353	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	30	353	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019707793.1	0.0	uncharacterized protein LOC105050915
Swissprot	Q9SJW0	1e-102	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2H3XFE7	0.0	A0A2H3XFE7_PHODC; myb family transcription factor PHL7-like
STRING	XP_008782978.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-71	G2-like family protein