PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010929381.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 313aa MW: 35156.6 Da PI: 8.571 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.3 | 2.3e-56 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfF rd+ky+tg r+nrat++gyWk+tgkdke++s XP_010929381.1 10 LPPGFRFHPTDEELITFYLSHKISEANFSA-RAITEVDLNKCEPWDLPAKAKMGEKEWYFFNLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFSG 103 79**************************99.89***************99999****************************************97 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++elvg+kktLvfykgrap+gekt+Wvmheyrl XP_010929381.1 104 qTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 137 57778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-64 | 8 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.953 | 10 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MEGGDKEEQL PPGFRFHPTD EELITFYLSH KISEANFSAR AITEVDLNKC EPWDLPAKAK 60 MGEKEWYFFN LRDRKYPTGV RTNRATNAGY WKTTGKDKEI FSGQTSELVG MKKTLVFYKG 120 RAPRGEKTNW VMHEYRLQSK SATKANKDEW VVCRVFMKSS SGKKYLSSQS RGNPYHHHHH 180 HHLGMVQPEA PHFGVGGRNY LTTSADLAEL SRFARGTPGS NLPIQPQFDF PPFTLSGLNV 240 GLGGQRTMPP VPLPHQPQLV AEPTSSVLAN SCVMAADEGF NADVLVTSTG TGGRYHQQID 300 PCVEFDQGYW PSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-56 | 10 | 164 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-56 | 10 | 164 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-56 | 10 | 164 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-56 | 10 | 164 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-56 | 10 | 164 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-56 | 10 | 164 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-56 | 10 | 164 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-56 | 10 | 164 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-56 | 10 | 164 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-56 | 10 | 164 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-56 | 10 | 164 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-56 | 10 | 164 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-56 | 10 | 164 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-56 | 10 | 164 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010929381.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3 isoform X2 | ||||
Swissprot | O04017 | 1e-80 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A2H3YP64 | 0.0 | A0A2H3YP64_PHODC; protein CUP-SHAPED COTYLEDON 2-like | ||||
STRING | XP_008801396.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 6e-93 | NAC domain containing protein 38 |