PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929155.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 315aa    MW: 35093.4 Da    PI: 7.5673
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929155.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.8e-30166224158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                     ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed+++++ tYegeHnh
  XP_010929155.1 166 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDTSIIVATYEGEHNH 224
                     58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-28160227IPR003657WRKY domain
PROSITE profilePS5081126.372161227IPR003657WRKY domain
SuperFamilySSF1182905.1E-25163227IPR003657WRKY domain
SMARTSM007743.1E-33166226IPR003657WRKY domain
PfamPF031063.5E-24167224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MESARMDPPS LSLDLGVGPL RLPEHTPIGQ RKLQTNPMHV ERSASFKDEA EDLEAKLNRM  60
SEENKKLNEM LGSMYADYST LRSQLFDLMS TSPKEKGLVS PSRKRKSESL ETISFDDMTY  120
ERTDGISNRV ESTSREDPCK RFREDPKPKI SKAYVKTDPS DTTLVVKDGY QWRKYGQKVT  180
RDNPSPRAYF RCSFAPSCPV KKKVQRSAED TSIIVATYEG EHNHVHPSQT ELAHGSCHNG  240
SLPCSVSINS SGPTITLDLT QQGLSPGGSA SREIESPEFQ RLLVEQMASS LTRDPNFTAA  300
LATAIFGRIL QHPPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-211652271374WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929156.10.0probable WRKY transcription factor 40 isoform X1
RefseqXP_029122105.10.0probable WRKY transcription factor 40 isoform X1
SwissprotQ6IEK53e-85WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A2H3Y6Z10.0A0A2H3Y6Z1_PHODC; WRKY transcription factor WRKY76-like
STRINGXP_008794348.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-81WRKY DNA-binding protein 40