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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_010929122.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 254aa MW: 26688.9 Da PI: 6.9419 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.2 | 0.00027 | 100 | 122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C + F ++ L H++ H
XP_010929122.1 100 FSCNYCRRKFYSSQALGGHQNAH 122
89*****************9988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 1.78E-6 | 97 | 128 | No hit | No description |
| PROSITE profile | PS50157 | 11.385 | 100 | 127 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 254 aa Download sequence Send to blast |
MESLGATIHS EATSSLSNKE AIMVKAEEEE GGAGGGGEQP ECNEVLLDLS MSNKDSDDGT 60 SSSAQPVLEL DLIGSLGATA GAAAIEAPPP ESRESEPRVF SCNYCRRKFY SSQALGGHQN 120 AHKRERSLTK RGPRPGHGLG CFPPSMAALP LHGAFGGRPL GIQVHSMVHK PYFGAAPSMA 180 GGVLNGRHGW CRPAAPTIDQ RPAVGRLRME NFWAAPSARF DEAGVAAGGY RWGGGNQLSA 240 GKEEVQKLDL SLKL |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010929121.1 | 0.0 | zinc finger protein 1 | ||||
| Refseq | XP_010929122.1 | 0.0 | zinc finger protein 1 | ||||
| TrEMBL | A0A2H3YZU1 | 1e-151 | A0A2H3YZU1_PHODC; zinc finger protein 1-like | ||||
| STRING | XP_008806291.1 | 1e-151 | (Phoenix dactylifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G80730.1 | 1e-29 | zinc-finger protein 1 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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