PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010928945.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C3H

Protein Properties

Length: 903aa MW: 99669.3 Da PI: 5.0584

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010928945.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	9.4e-06	311	331	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ff + G+C G++C+F H XP_010928945.1 311 ICAFFKQ-GWCIKGNSCSFLHL 331 5998888.*************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	4.71E-6	306	330	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.122	306	333	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.4E-4	311	334	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010220	Biological Process	positive regulation of vernalization response
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 903 aa Download sequence Send to blast
MPKRPAPGFD STPERSAMAD SPPGAGDGEE SPEEERYIDE EEEEVEEMVE EEEDDEEGEE 60 GSQGEGAEDE EEVAEVEGEE GSDSSDAEAH PGEDAHDASE KVESAGNGKD LKSVSSLHKR 120 SCIDQSLAIH GRDGVGDLTA SDSSPKLLAV DSEQGSAIND RDTRSAIQDK HIMSSEKSKF 180 FISHLAGRDI EVLLEKETSI EASKDGRRYN FETHGNYKSN LSSDCSISGK DTRSFHVNED 240 KPVVQSMIKS GSRYGKMDGA IEKDAPNPYT KINLHPPEDF GVSSIHTPQR RRRSSSPGAP 300 FEISKKRPAI ICAFFKQGWC IKGNSCSFLH LKEEDARSSQ WAKENIAESN TMYDSMDHTG 360 SREEAQRLKP STSHEPLDSL NFEKPSKLDL QRALVRAYGG EGSGFTQFHD EYDKHSSKIS 420 AEEHFRYDIS GSDRALNLPV NELRKASLVQ EGYQRPIGVS PYLHPMDERH SASGEFLSRR 480 YLDEGKLHQE MPKEEFLNDA TFSRASPLSR NPLILESGYY SEQSSAAAGL YQNSNNSYSH 540 GKMTEDVAIG YQQSRFPPPD PKYCSYSLSS SSNLRFDNSF QPLSGSPPVQ TLAQTGTSST 600 SRSMPLSAEH FDSNRTFNFN RGYYGSRSAS LPSNSSPYYS RSEIGSNMQQ DILADVPPSA 660 GSKIQVNSWE PSERFQSSFC APASKPSPGS QYDPLIDSIE HPKAGNVTIQ TSPITIIHNV 720 SSQHISGHAP VYSSQKPLNS PHHSTEDIFD ESALAHQFNG HIAPLPATGP DTVDAGKSSV 780 PKDEKCWVPH VTDGENINVV DLGNNTRNQV DKARNDKESK ALRIFRVALV DFVKELVKPF 840 WREGHLSKDA HKMIVKKAVE KVIGSLQPHQ IPSTAESINQ YLSLSQTKLL KLVEAYVDKY 900 AKS

Sequence ? help Back to Top

Protein Sequence Length: 903 aa Download sequence Send to blast

MPKRPAPGFD STPERSAMAD SPPGAGDGEE SPEEERYIDE EEEEVEEMVE EEEDDEEGEE  60
GSQGEGAEDE EEVAEVEGEE GSDSSDAEAH PGEDAHDASE KVESAGNGKD LKSVSSLHKR  120
SCIDQSLAIH GRDGVGDLTA SDSSPKLLAV DSEQGSAIND RDTRSAIQDK HIMSSEKSKF  180
FISHLAGRDI EVLLEKETSI EASKDGRRYN FETHGNYKSN LSSDCSISGK DTRSFHVNED  240
KPVVQSMIKS GSRYGKMDGA IEKDAPNPYT KINLHPPEDF GVSSIHTPQR RRRSSSPGAP  300
FEISKKRPAI ICAFFKQGWC IKGNSCSFLH LKEEDARSSQ WAKENIAESN TMYDSMDHTG  360
SREEAQRLKP STSHEPLDSL NFEKPSKLDL QRALVRAYGG EGSGFTQFHD EYDKHSSKIS  420
AEEHFRYDIS GSDRALNLPV NELRKASLVQ EGYQRPIGVS PYLHPMDERH SASGEFLSRR  480
YLDEGKLHQE MPKEEFLNDA TFSRASPLSR NPLILESGYY SEQSSAAAGL YQNSNNSYSH  540
GKMTEDVAIG YQQSRFPPPD PKYCSYSLSS SSNLRFDNSF QPLSGSPPVQ TLAQTGTSST  600
SRSMPLSAEH FDSNRTFNFN RGYYGSRSAS LPSNSSPYYS RSEIGSNMQQ DILADVPPSA  660
GSKIQVNSWE PSERFQSSFC APASKPSPGS QYDPLIDSIE HPKAGNVTIQ TSPITIIHNV  720
SSQHISGHAP VYSSQKPLNS PHHSTEDIFD ESALAHQFNG HIAPLPATGP DTVDAGKSSV  780
PKDEKCWVPH VTDGENINVV DLGNNTRNQV DKARNDKESK ALRIFRVALV DFVKELVKPF  840
WREGHLSKDA HKMIVKKAVE KVIGSLQPHQ IPSTAESINQ YLSLSQTKLL KLVEAYVDKY  900
AKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010928945.1	0.0	zinc finger CCCH domain-containing protein 36
TrEMBL	A0A2H3XWD4	0.0	A0A2H3XWD4_PHODC; zinc finger CCCH domain-containing protein 36-like
STRING	XP_008789750.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11010	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	8e-29	C3H family protein