PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928608.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 283aa    MW: 31526.8 Da    PI: 4.8639
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928608.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-2067120356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fe ++++  e++ eLA+klgL+ rqV vWFqNrRa++k
  XP_010928608.1  67 KKRRLTPEQVHLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWK 120
                     5678*************************************************9 PP
2HD-ZIP_I/II134.24.8e-4366157192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+ eqv+lLE+sFe+e+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++yd+l +++++L k++++Lr+++ 
  XP_010928608.1  66 EKKRRLTPEQVHLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKSSYDSLLADHDSLLKDNDRLRSQVI 157
                     69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007118.05862122IPR001356Homeobox domain
SMARTSM003894.7E-2065126IPR001356Homeobox domain
PfamPF000467.5E-1867120IPR001356Homeobox domain
CDDcd000864.41E-2067123No hitNo description
SuperFamilySSF466893.3E-1967132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-2268129IPR009057Homeodomain-like
PRINTSPR000311.2E-693102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000311.2E-6102118IPR000047Helix-turn-helix motif
PfamPF021834.0E-18122164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDSGHLIFDS SSSHHGRMLL LGGGSPIFQG ARSVLGMEEG ANKRRLFFTS PDELLEEEYY  60
DEQLPEKKRR LTPEQVHLLE RSFEAENKLE PERKSELARK LGLQPRQVAV WFQNRRARWK  120
TKQLERDFDR LKSSYDSLLA DHDSLLKDND RLRSQVISLT EKLQAKDLEA AGAASGLKPD  180
DQAASSADHA ALNVPQVKAE DRLSTGSGGS AVVDGDGPPH LVDSSGESYF PESYHCLGPV  240
HGGVLSEEDD GSDEGCSYYP NGMFAEHHHP DEEAAQLGWW VWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928608.10.0homeobox-leucine zipper protein HOX16 isoform X2
SwissprotQ6YWR45e-92HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A2H3XD951e-167A0A2H3XD95_PHODC; homeobox-leucine zipper protein HOX16 isoform X1
STRINGXP_008781998.11e-167(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-77homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]