PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010928534.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 355aa MW: 39679.2 Da PI: 9.4105 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00044 | 113 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C Cg+ F + L+ H r H XP_010928534.1 113 YPCRVCGRNFFAHAKLVDHFRQiH 136 99*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.32E-5 | 111 | 139 | No hit | No description |
PROSITE profile | PS50157 | 11.926 | 113 | 141 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 115 | 136 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 6.32E-12 | 142 | 265 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MIGFLRQFRG PVTTFHLSAG LLPKTLVSAA AAASKPSVAV FWDLDNKPPK SIPPYDAAVR 60 LKLAASSLGS LRFCVAYANH HAFRHVPAPV RAARAAGRAR DHREASQPSP EPYPCRVCGR 120 NFFAHAKLVD HFRQIHEREH AKRLRRLDST RGGRRVRLAA QLALKMEKYE KAARELLVPR 180 VGYGLADELR RAGVVVRTVE DRPEAADRAL REHIVDTMDR GKIGCLVVVS DDSGFVGVLR 240 EARMRCLKTV VVGDEGDGAL KRCADANFSW KDVISGKARK EAESAVGKWN DRELLKRLEW 300 TYEPDLEQIE DDVFEGQSED GDDEDGSFGL VGKRWSKDSK PWWKLDSDSC DSIVR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 98 | RAARAAGRA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010928534.1 | 0.0 | uncharacterized protein LOC105050282 | ||||
TrEMBL | A0A2H3Y5P7 | 0.0 | A0A2H3Y5P7_PHODC; uncharacterized protein LOC103710014 | ||||
STRING | XP_008793801.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12234 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 3e-94 | C2H2 family protein |